9CU6 image
Entry Detail
PDB ID:
9CU6
EMDB ID:
Title:
LJF-034 Fab in complex with HIV Env JRFL NFL TD CC3+ trimer and 35O22 Fab
Biological Source:
PDB Version:
Deposition Date:
2024-07-25
Release Date:
2025-05-21
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:JRFL NFL TD CC3+ gp140
Chain IDs:A, J (auth: B), M (auth: C)
Chain Length:649
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:35O22 heavy chain Fv
Chain IDs:B (auth: D), E (auth: F), H (auth: J)
Chain Length:131
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:35O22 light chain Fv
Chain IDs:D (auth: E), G, I (auth: K)
Chain Length:114
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:LJF-034 heavy chain Fv
Chain IDs:C (auth: H), K (auth: I)
Chain Length:123
Number of Molecules:2
Biological Source:Macaca mulatta
Polymer Type:polypeptide(L)
Description:LJF-034 light chain Fv
Chain IDs:F (auth: L), L (auth: M)
Chain Length:107
Number of Molecules:2
Biological Source:Macaca mulatta
Ligand Molecules
Primary Citation

Abstact

The elicitation of cross-neutralizing antibodies to the HIV-1 envelope glycoprotein (Env) by vaccination remains a major challenge. Here, we immunized previously Env-immunized nonhuman primates with a series of near-native trimers that possessed N-glycan deletions proximal to the conserved CD4 binding site (CD4bs) to focus B cells to this region. Following heterologous boosting with fully glycosylated trimers, we detected tier 2 cross-neutralizing activity in the serum of several animals. Isolation of 185 matched heavy- and light-chain sequences from Env-binding memory B cells from an early responder identified a broadly neutralizing antibody lineage, LJF-0034, which neutralized nearly 70% of an 84-member HIV-1 global panel. High-resolution cryoelectron microscopy (cryo-EM) structures revealed a bifurcated binding mode that bridged the CD4bs to V3 across the gp120:120 interface on two adjacent protomers, evading the proximal N276 glycan impediment to the CD4bs, allowing neutralization breadth. This quaternary epitope defines a potential target for future HIV-1 vaccine development.

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Protein

Chemical

Disease

Primary Citation of related structures