9CTH image
Entry Detail
PDB ID:
9CTH
EMDB ID:
Keywords:
Title:
Preliminary map of the Prothrombin-prothrombinase complex on nano discs
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-07-25
Release Date:
2024-08-07
Method Details:
Experimental Method:
Resolution:
6.47 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Activated Factor V (FVa) heavy chain
Chain IDs:A
Chain Length:709
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Activated Factor X light chain
Chain IDs:C (auth: B)
Chain Length:142
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Activated Factor X heavy chain
Mutations:S195A
Chain IDs:D (auth: C)
Chain Length:235
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Prothrombin
Mutations:S525A
Chain IDs:E (auth: D)
Chain Length:579
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Activated Factor V (FVa) light chain
Chain IDs:B (auth: E)
Chain Length:651
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
The Prothrombin-Prothrombinase Interaction.
Subcell Biochem 104 409 423 (2024)
PMID: 38963494 DOI: 10.1182/blood-2010-09-311035

Abstact

The hemostatic response to vascular injury entails a sequence of proteolytic events where several inactive zymogens of the trypsin family are converted to active proteases. The cascade starts with exposure of tissue factor from the damaged endothelium and culminates with conversion of prothrombin to thrombin in a reaction catalyzed by the prothrombinase complex composed of the enzyme factor Xa, cofactor Va, Ca2+, and phospholipids. This cofactor-dependent activation is paradigmatic of analogous reactions of the blood coagulation and complement cascades, which makes elucidation of its molecular mechanism of broad significance to the large class of trypsin-like zymogens to which prothrombin belongs. Because of its relevance as the most important reaction in the physiological response to vascular injury, as well as the main trigger of pathological thrombotic complications, the mechanism of prothrombin activation has been studied extensively. However, a molecular interpretation of this mechanism has become available only recently from important developments in structural biology. Here we review current knowledge on the prothrombin-prothrombinase interaction and outline future directions for the study of this key reaction of the coagulation cascade.

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Primary Citation of related structures