9CS3 image
Deposition Date 2024-07-23
Release Date 2025-01-22
Last Version Date 2025-05-21
Entry Detail
PDB ID:
9CS3
Keywords:
Title:
TRiC-ADP-S2 state is a conformation when TRiC incubated in 1 mM ADP
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
5.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:T-complex protein 1 subunit alpha
Gene (Uniprot):TCP1
Chain IDs:A, G (auth: a)
Chain Length:559
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:T-complex protein 1 subunit beta
Gene (Uniprot):CCT2
Chain IDs:B, H (auth: b)
Chain Length:527
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:T-complex protein 1 subunit delta
Gene (Uniprot):CCT4
Chain IDs:O (auth: D), P (auth: d)
Chain Length:528
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:T-complex protein 1 subunit epsilon
Gene (Uniprot):CCT5
Chain IDs:C (auth: E), I (auth: e)
Chain Length:562
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:T-complex protein 1 subunit gamma
Gene (Uniprot):CCT3
Mutations:An internal strep tag and His-tag are between residues 374 and 435
Chain IDs:D (auth: G), J (auth: g)
Chain Length:594
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:T-complex protein 1 subunit eta
Gene (Uniprot):CCT7
Chain IDs:E (auth: H), K (auth: h)
Chain Length:550
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:T-complex protein 1 subunit theta
Gene (Uniprot):CCT8
Chain IDs:F (auth: Q), L (auth: q)
Chain Length:568
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:T-complex protein 1 subunit zeta
Gene (Uniprot):CCT6
Chain IDs:M (auth: z), N (auth: Z)
Chain Length:546
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Ligand Molecules
Primary Citation
The conformational landscape of TRiC ring-opening and its underlying stepwise mechanism revealed by cryo-EM.
Qrb Discov 6 e7 e7 (2025)
PMID: 40070846 DOI: 10.1017/qrd.2024.17

Abstact

The TRiC/CCT complex assists in the folding of approximately 10% of cytosolic proteins through an ATP-driven conformational cycle, playing a crucial role in maintaining protein homeostasis. Despite our understanding of ATP-driven TRiC ring closing and substrate folding, the process and mechanisms underlying TRiC ring-opening and substrate release remain largely unexplored. In this study, by determining an ensemble of cryo-EM structures of yeast TRiC in the presence of ADP, including three intermediate transition states, we present a comprehensive picture of the TRiC ring-opening process. During this process, CCT3 detects the loss of γ-phosphate and initiates with the dynamics of its apical protrusion, and expands to the outward leaning of the consecutive CCT6/8/7/5 subunits. This is followed by significant movements of CCT2, CCT4, and especially CCT1 subunits, resulting in the opening of the TRiC rings. We also observed an unforeseen temporary separation between the two rings in the CCT2 side, coordinating the release of the originally locked CCT4 N-terminus, which potentially participates in the ring-opening process. Collectively, our study reveals a stepwise TRiC ring-opening mechanism, provides a comprehensive view of the TRiC conformational landscape, and sheds lights on its subunit specificity in sensing nucleotide status and substrate release. Our findings deepen our understanding of protein folding assisted by TRiC and may inspire new strategies for the diagnosis and treatment of related diseases.

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Primary Citation of related structures