9CQQ image
Entry Detail
PDB ID:
9CQQ
EMDB ID:
Keywords:
Title:
Human metHb (C1 symmetry) obtained using the SPT Labtech chameleon under Al's Oil
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2024-07-19
Release Date:
2025-04-30
Method Details:
Experimental Method:
Resolution:
2.91 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Hemoglobin subunit alpha
Chain IDs:A, C
Chain Length:140
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Hemoglobin subunit beta
Chain IDs:B, D
Chain Length:146
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Preparation of oxygen-sensitive proteins for high-resolution cryoEM structure determination using blot-free vitrification.
Nat Commun 16 3528 3528 (2025)
PMID: 40229244 DOI: 10.1038/s41467-025-58243-1

Abstact

High-quality grid preparation for single-particle cryogenic electron microscopy (cryoEM) remains a bottleneck for routinely obtaining high-resolution structures. The issues that arise from traditional grid preparation workflows are particularly exacerbated for oxygen-sensitive proteins, including metalloproteins, whereby oxygen-induced damage and alteration of oxidation states can result in protein inactivation, denaturation, and/or aggregation. Indeed, 99% of the current structures in the EMBD were prepared aerobically and limited successes for anaerobic cryoEM grid preparation exist. Current practices for anaerobic grid preparation involve a vitrification device located in an anoxic chamber, which presents significant challenges including temperature and humidity control, optimization of freezing conditions, costs for purchase and operation, as well as accessibility. Here, we present a streamlined approach that allows for the vitrification of oxygen-sensitive proteins in reduced states using an automated blot-free grid vitrification device - the SPT Labtech chameleon. This robust workflow allows for high-resolution structure determination of dynamic, oxygen-sensitive proteins, of varying complexity and molecular weight.

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Primary Citation of related structures