9CQL image
Entry Detail
PDB ID:
9CQL
EMDB ID:
Title:
Dimeric 9C2 gamma delta TCR bound by Fab 3
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-07-19
Release Date:
2025-01-15
Method Details:
Experimental Method:
Resolution:
3.46 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:9C2 TCR delta chain
Chain IDs:A (auth: E), E (auth: A)
Chain Length:280
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:9C2 TCR gamma chain
Chain IDs:B (auth: F), F (auth: B)
Chain Length:294
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:anti TCR variable delta 1 Fab heavy chain Fab 3
Chain IDs:C (auth: J), G (auth: C)
Chain Length:224
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:anti TCR variable delta 1 Fab light chain Fab 3
Chain IDs:D (auth: K), H (auth: D)
Chain Length:219
Number of Molecules:2
Biological Source:Mus musculus
Primary Citation
Structural characterization of two gamma delta TCR/CD3 complexes.
Nat Commun 16 318 318 (2025)
PMID: 39747888 DOI: 10.1038/s41467-024-55467-5

Abstact

The T-cell receptor (TCR)/CD3 complex plays an essential role in the immune response and is a key player in cancer immunotherapies. There are two classes of TCR/CD3 complexes, defined by their TCR chain usage (αβ or γδ). Recently reported structures have revealed the organization of the αβ TCR/CD3 complex, but similar studies regarding the γδ TCR/CD3 complex have lagged behind. Here, we report cryoelectron microscopy (cryoEM) structural analysis of two γδ TCRs, G115 (Vγ9 Vδ2) and 9C2 (Vγ5 Vδ1), in complex with CD3 subunits. Our results show that the overall subunit organization of the γδ TCR/CD3 complexes is similar to αβ TCRs. However, both γδ TCRs display highly mobile extracellular domains (ECDs), unlike αβ TCRs, which have TCR ECDs that are rigidly coupled to its transmembrane (TM) domains. We corroborate this finding in cells by demonstrating that a γδ T-cell specific antibody can bind a site that would be inaccessible in the more rigid αβ TCR/CD3 complex. Furthermore, we observed that the Vγ5 Vδ1 complex forms a TCR γ5 chain-mediated dimeric species whereby two TCR/CD3 complexes are assembled. Collectively, these data shed light on γδ TCR/CD3 complex formation and may aid the design of γδ TCR-based therapies.

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Primary Citation of related structures