9CQ5 image
Deposition Date 2024-07-19
Release Date 2025-02-05
Last Version Date 2025-02-05
Entry Detail
PDB ID:
9CQ5
Keywords:
Title:
Mn-bound RuBisCO from spinach with CABP inhibitor
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribulose bisphosphate carboxylase large chain
Gene (Uniprot):rbcL
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:475
Number of Molecules:8
Biological Source:Spinacia oleracea
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribulose bisphosphate carboxylase small subunit, chloroplastic 2
Gene (Uniprot):RBCS2
Chain IDs:I, J, K, L, M, N, O, P
Chain Length:123
Number of Molecules:8
Biological Source:Spinacia oleracea
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
KCX A LYS modified residue
Primary Citation
The structure of Mn(II)-bound Rubisco from Spinacia oleracea.
J.Inorg.Biochem. 260 112682 112682 (2024)
PMID: 39094246 DOI: 10.1016/j.jinorgbio.2024.112682

Abstact

The rate of photosynthesis and, thus, CO2 fixation, is limited by the rate of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco). Not only does Rubisco have a relatively low catalytic rate, but it also is promiscuous regarding the metal identity in the active site of the large subunit. In Nature, Rubisco binds either Mg(II) or Mn(II), depending on the chloroplastic ratio of these metal ions; most studies performed with Rubisco have focused on Mg-bound Rubisco. Herein, we report the first crystal structure of a Mn-bound Rubisco, and we compare its structural properties to those of its Mg-bound analogues.

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Chemical

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Primary Citation of related structures
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