9CQ4 image
Deposition Date 2024-07-19
Release Date 2025-01-15
Last Version Date 2025-01-15
Entry Detail
PDB ID:
9CQ4
Title:
G115 gamma delta TCR/CD3 complex bound by OKT3 Fab
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.27 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:G115 TCR delta chain
Chain IDs:E (auth: A)
Chain Length:283
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:G115 TCR gamma chain
Chain IDs:F (auth: B)
Chain Length:295
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:OKT3 Fab heavy chain
Chain IDs:A (auth: C), C (auth: H)
Chain Length:238
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:OKT3 Fab light chain
Chain IDs:B (auth: D), D (auth: L)
Chain Length:213
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:T-cell surface glycoprotein CD3 epsilon chain
Gene (Uniprot):CD3E
Chain IDs:H (auth: E), I (auth: F)
Chain Length:210
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:T-cell surface glycoprotein CD3 gamma chain
Gene (Uniprot):CD3G
Chain IDs:J (auth: G)
Chain Length:185
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:T-cell surface glycoprotein CD3 delta chain
Gene (Uniprot):CD3D
Chain IDs:G (auth: K)
Chain Length:174
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:T-cell surface glycoprotein CD3 zeta chain
Gene (Uniprot):CD247
Chain IDs:K (auth: Y), L (auth: Z)
Chain Length:173
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structural characterization of two gamma delta TCR/CD3 complexes.
Nat Commun 16 318 318 (2025)
PMID: 39747888 DOI: 10.1038/s41467-024-55467-5

Abstact

The T-cell receptor (TCR)/CD3 complex plays an essential role in the immune response and is a key player in cancer immunotherapies. There are two classes of TCR/CD3 complexes, defined by their TCR chain usage (αβ or γδ). Recently reported structures have revealed the organization of the αβ TCR/CD3 complex, but similar studies regarding the γδ TCR/CD3 complex have lagged behind. Here, we report cryoelectron microscopy (cryoEM) structural analysis of two γδ TCRs, G115 (Vγ9 Vδ2) and 9C2 (Vγ5 Vδ1), in complex with CD3 subunits. Our results show that the overall subunit organization of the γδ TCR/CD3 complexes is similar to αβ TCRs. However, both γδ TCRs display highly mobile extracellular domains (ECDs), unlike αβ TCRs, which have TCR ECDs that are rigidly coupled to its transmembrane (TM) domains. We corroborate this finding in cells by demonstrating that a γδ T-cell specific antibody can bind a site that would be inaccessible in the more rigid αβ TCR/CD3 complex. Furthermore, we observed that the Vγ5 Vδ1 complex forms a TCR γ5 chain-mediated dimeric species whereby two TCR/CD3 complexes are assembled. Collectively, these data shed light on γδ TCR/CD3 complex formation and may aid the design of γδ TCR-based therapies.

Legend

Protein

Chemical

Disease

Primary Citation of related structures