9COD image
Entry Detail
PDB ID:
9COD
EMDB ID:
Title:
C15 symmetrized DEV collar
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2024-07-16
Release Date:
2024-10-16
Method Details:
Experimental Method:
Resolution:
4.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:SGNH hydrolase-type esterase domain-containing protein
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L, M, N, O
Chain Length:1090
Number of Molecules:15
Biological Source:Pseudomonas aeruginosa
Ligand Molecules
Primary Citation
Integrative structural analysis of Pseudomonas phage DEV reveals a genome ejection motor.
Nat Commun 15 8482 8482 (2024)
PMID: 39353939 DOI: 10.1038/s41467-024-52752-1

Abstact

DEV is an obligatory lytic Pseudomonas phage of the N4-like genus, recently reclassified as Schitoviridae. The DEV genome encodes 91 ORFs, including a 3398 amino acid virion-associated RNA polymerase (vRNAP). Here, we describe the complete architecture of DEV, determined using a combination of cryo-electron microscopy localized reconstruction, biochemical methods, and genetic knockouts. We built de novo structures of all capsid factors and tail components involved in host attachment. We demonstrate that DEV long tail fibers are essential for infection of Pseudomonas aeruginosa but dispensable for infecting mutants with a truncated lipopolysaccharide devoid of the O-antigen. We determine that DEV vRNAP is part of a three-gene operon conserved in 191 Schitoviridae genomes. We propose these three proteins are ejected into the host to form a genome ejection motor spanning the cell envelope. We posit that the design principles of the DEV ejection apparatus are conserved in all Schitoviridae.

Legend

Protein

Chemical

Disease

Primary Citation of related structures