9CN0 image
Deposition Date 2024-07-15
Release Date 2025-09-03
Last Version Date 2025-11-19
Entry Detail
PDB ID:
9CN0
Title:
The cryo-EM structure of BamADE subcomplex from Neisseria gonorrhoeae
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
6.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Outer membrane protein assembly factor BamA
Gene (Uniprot):bamA
Chain IDs:A
Chain Length:793
Number of Molecules:1
Biological Source:Neisseria gonorrhoeae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Outer membrane protein assembly factor BamD
Gene (Uniprot):bamD
Chain IDs:B (auth: D)
Chain Length:272
Number of Molecules:1
Biological Source:Neisseria gonorrhoeae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Outer membrane protein assembly factor BamE
Gene (Uniprot):smpA
Chain IDs:C (auth: E)
Chain Length:140
Number of Molecules:1
Biological Source:Neisseria gonorrhoeae
Ligand Molecules
Primary Citation
Structural insights into outer membrane protein biogenesis in pathogenic Neisseria.
Structure 33 1893 ? (2025)
PMID: 40902586 DOI: 10.1016/j.str.2025.08.009

Abstact

N. gonorrhoeae (Ngo) causes the sexually transmitted infection gonorrhea with ∼106 million infections worldwide annually. Ngo infections can result in an increased risk of acquiring HIV, infertility, and blindness. To combat Ngo infections, we report the cryoelectron microscopy (cryo-EM) structure of the Ngo β-barrel assembly machinery (NgBAM), which is responsible for the biogenesis of β-barrel outer membrane proteins (OMPs). NgBAM was observed in an inward-open state; however, the polypeptide transport-associated (POTRA) domains more closely match those found in the outward-open state in E. coli β-barrel assembly machinery (BAM). The barrel seam of NgBamA consists of partial pairing of strand β1 with β16; no outward-open state of NgBAM was observed. Molecular dynamics (MD) simulations reveal unique overall dynamics and interplay between the POTRA domains of NgBamA and NgBamD. We propose that in Ngo, initial recognition occurs in the inward-open state where the last strand of the OMP partially pairs with β1 of NgBamA and must compete off β16.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
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