9CMI image
Entry Detail
PDB ID:
9CMI
EMDB ID:
Title:
Cryo-EM structure of human claudin-4 complex with Clostridium perfringens enterotoxin, sFab COP-1, and Nanobody
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2024-07-15
Release Date:
2024-08-07
Method Details:
Experimental Method:
Resolution:
2.83 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Claudin-4
Chain IDs:A
Chain Length:211
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Heat-labile enterotoxin B chain
Chain IDs:B
Chain Length:299
Number of Molecules:1
Biological Source:Clostridium perfringens
Polymer Type:polypeptide(L)
Description:COP-1 sFab Heavy Chain
Chain IDs:C (auth: H)
Chain Length:261
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Anti-Fab Nanobody
Chain IDs:D (auth: K)
Chain Length:121
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:COP-1 sFab Light Chain
Chain IDs:E (auth: L)
Chain Length:238
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Cryo-EM structures of Clostridium perfringens enterotoxin bound to its human receptor, claudin-4.
Structure 32 1936 ? (2024)
PMID: 39383874 DOI: 10.1016/j.str.2024.09.015

Abstact

Clostridium perfringens enterotoxin (CpE) causes prevalent and deadly gastrointestinal disorders. CpE binds to receptors called claudins on the apical surfaces of small intestinal epithelium. Claudins normally regulate paracellular transport but are hijacked from doing so by CpE and are instead led to form claudin/CpE complexes. Claudin/CpE complexes are the building blocks of oligomeric β-barrel pores that penetrate the plasma membrane and induce gut cytotoxicity. Here, we present the structures of CpE in complex with its native claudin receptor in humans, claudin-4, using cryogenic electron microscopy. The structures reveal the architecture of the claudin/CpE complex, the residues used in binding, the orientation of CpE relative to the membrane, and CpE-induced changes to claudin-4. Further, structures and modeling allude to the biophysical procession from claudin/CpE complexes to cytotoxic β-barrel pores during pathogenesis. In full, this work proposes a model of claudin/CpE assembly and provides strategies to obstruct its formation to treat CpE diseases.

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Primary Citation of related structures