9CLN image
Entry Detail
PDB ID:
9CLN
EMDB ID:
Keywords:
Title:
Cryo-EM model derived from localized reconstruction of human adenovirus 5 (Ad5)-hexon-FII complex at 3.9A resolution
Biological Source:
PDB Version:
Deposition Date:
2024-07-11
Release Date:
2024-11-27
Method Details:
Experimental Method:
Resolution:
4.13 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Hexon protein
Chain IDs:A (auth: J), B (auth: K), C (auth: L)
Chain Length:952
Number of Molecules:3
Biological Source:Human adenovirus 5
Polymer Type:polypeptide(L)
Description:Prothrombin
Chain IDs:D (auth: Z)
Chain Length:622
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CGU D GLU modified residue
Ligand Molecules
Primary Citation
Structure-derived insights from blood factors binding to the surfaces of different adenoviruses.
Nat Commun 15 9768 9768 (2024)
PMID: 39528527 DOI: 10.1038/s41467-024-54049-9

Abstact

The tropism of adenoviruses (Ads) is significantly influenced by the binding of various blood factors. To investigate differences in their binding, we conducted cryo-EM analysis on complexes of several human adenoviruses with human platelet factor-4 (PF4), coagulation factors FII (Prothrombin), and FX. While we observed EM densities for FII and FX bound to all the species-C adenoviruses examined, no densities were seen for PF4, even though PF4 can co-pellet with various Ads. Similar to FX, the γ-carboxyglutamic acid (Gla) domain of FII binds within the surface cavity of hexon trimers. While FII binds equally to species-C Ads: Ad5, Ad6, and Ad657, FX exhibits significantly better binding to Ad5 and Ad657 compared to Ad6. Although only the FX-Gla domain is observed at high-resolution (3.7 Å), the entire FX is visible at low-resolution bound to Ad5 in three equivalent binding modes consistent with the 3-fold symmetric hexon. Only the Gla and kringle-1 domains of FII are visible on all the species-C adenoviruses, where the rigid FII binds in an upright fashion, in contrast to the flexible and bent FX. These data suggest that differential binding of FII and FX may shield certain species-C adenoviruses differently against immune molecules, thereby modulating their tropism.

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Primary Citation of related structures