9CL9 image
Deposition Date 2024-07-10
Release Date 2024-07-24
Last Version Date 2024-07-24
Entry Detail
PDB ID:
9CL9
Keywords:
RIBOSOME
Title:
WT 12C IM fraction, B-b3 with RluB bound
Biological Source:
Source Organism:
Escherichia coli K-12 (Taxon ID: 83333)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
5.04 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9CL9 validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL34
Gene (Uniprot):rpmH
Chain IDs:D (auth: 2)
Chain Length:37
Number of Molecules:1
Biological Source:Escherichia coli K-12
UniProt ID:P0A7P5 Pfam ID:PF00468
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal large subunit pseudouridine synthase B
Gene (Uniprot):rluB
Chain IDs:E (auth: A)
Chain Length:283
Number of Molecules:1
Biological Source:Escherichia coli K-12
UniProt ID:P37765 Pfam ID:PF01479, PF00849 EC:5.4.99.22
Polymer Type:polyribonucleotide
Molecule:23S rRNA
Chain IDs:F (auth: CA)
Chain Length:2904
Number of Molecules:1
Biological Source:Escherichia coli K-12
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL3
Gene (Uniprot):rplC
Chain IDs:G (auth: D)
Chain Length:209
Number of Molecules:1
Biological Source:Escherichia coli K-12
UniProt ID:P60438 Pfam ID:PF00297
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL4
Gene (Uniprot):rplD
Chain IDs:H (auth: E)
Chain Length:201
Number of Molecules:1
Biological Source:Escherichia coli K-12
UniProt ID:P60723 Pfam ID:PF00573
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL13
Gene (Uniprot):rplM
Chain IDs:I (auth: J)
Chain Length:142
Number of Molecules:1
Biological Source:Escherichia coli K-12
UniProt ID:P0AA10 Pfam ID:PF00572
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL20
Gene (Uniprot):rplT
Chain IDs:A (auth: Q)
Chain Length:117
Number of Molecules:1
Biological Source:Escherichia coli K-12
UniProt ID:P0A7L3 Pfam ID:PF00453
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL21
Gene (Uniprot):rplU
Chain IDs:B (auth: R)
Chain Length:103
Number of Molecules:1
Biological Source:Escherichia coli K-12
UniProt ID:P0AG48 Pfam ID:PF00829
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL22
Gene (Uniprot):rplV
Chain IDs:J (auth: S)
Chain Length:110
Number of Molecules:1
Biological Source:Escherichia coli K-12
UniProt ID:P61175 Pfam ID:PF00237
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL23
Gene (Uniprot):rplW
Chain IDs:C (auth: T)
Chain Length:90
Number of Molecules:1
Biological Source:Escherichia coli K-12
UniProt ID:P0ADZ0 Pfam ID:PF00276
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL24
Gene (Uniprot):rplX
Chain IDs:K (auth: U)
Chain Length:102
Number of Molecules:1
Biological Source:Escherichia coli K-12
UniProt ID:P60624 Pfam ID:PF00467, PF17136
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL29
Gene (Uniprot):rpmC
Chain IDs:L (auth: Y)
Chain Length:60
Number of Molecules:1
Biological Source:Escherichia coli K-12
UniProt ID:P0A7M6 Pfam ID:PF00831
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
OMU F U modified residue
Ligand Molecules
NA
Primary Citation
50S ribosome assembly intermediates at low temperature reveal bound RluB
To Be Published ? ? ? (?)
Primary Citation of related structures
9CL9