9CKZ image
Deposition Date 2024-07-10
Release Date 2025-06-18
Last Version Date 2025-06-18
Entry Detail
PDB ID:
9CKZ
Title:
Cryo-EM structure of human XPR1 in apo state
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.45 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Solute carrier family 53 member 1
Gene (Uniprot):XPR1
Chain IDs:A, B
Chain Length:724
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
The identification of XPR1 as a voltage- and phosphate-activated phosphate-permeable ion channel.
Nat Commun 16 4519 4519 (2025)
PMID: 40374661 DOI: 10.1038/s41467-025-59678-2

Abstact

Maintaining a balance of inorganic phosphate (Pi) is vital for cellular functionality. Proper phosphate levels are managed through Pi import and export; and the processes governing Pi export remain the least understood. Xenotropic and Polytropic retrovirus Receptor 1 (XPR1) has been identified as the only known Pi export protein in mammals. In this study, we introduce the cryogenic electron microscopy structure of human XPR1 (hXPR1), unveiling a structural arrangement distinct from that of any known ion transporter. Our structural results suggest that hXPR1 may operate as an ion channel, a hypothesis supported by patch clamp recordings revealing hXPR1's voltage- and Pi-dependent activity and large unitary conductance. Further analyses, including the structure of hXPR1 in presence of Pi, and mutagenesis studies at one of the putative Pi binding sites, lead us to propose a plausible ion permeation pathway. Together, our results provide novel perspectives on the Pi transport mechanism of XPR1.

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Primary Citation of related structures