9CKN image
Entry Detail
PDB ID:
9CKN
Keywords:
Title:
Histidine-covalent alpha-helical peptide (compound 6) targeting hMcl-1
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2024-07-09
Release Date:
2024-11-27
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Induced myeloid leukemia cell differentiation protein Mcl-1
Chain IDs:A, B
Chain Length:156
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Helical Peptide
Chain IDs:C (auth: D), D (auth: E)
Chain Length:14
Number of Molecules:2
Biological Source:synthetic construct
Primary Citation
Covalent Targeting of Histidine Residues with Aryl Fluorosulfates: Application to Mcl-1 BH3 Mimetics.
J.Med.Chem. 67 20214 20223 (2024)
PMID: 39532346 DOI: 10.1021/acs.jmedchem.4c01541

Abstact

Covalent drugs provide pharmacodynamic and pharmacokinetic advantages over reversible agents. However, covalent strategies have been developed mostly to target cysteine (Cys) residues, which are rarely found in binding sites. Among other nucleophilic residues that could be in principle used for the design of covalent drugs, histidine (His) has not been given proper attention despite being in principle an attractive residue to pursue but underexplored. Aryl fluorosulfates, a mild electrophile that is very stable in biological media, have been recently identified as possible electrophiles to react with the side chains of Lys; however, limited studies are available on aryl fluorosulfates' ability to target His residues. We demonstrate that proper incorporation of an aryl fluorosulfate juxtaposing the electrophile with a His residue can be used to afford rapid optimizations of His-covalent agents. As an application, we report on His-covalent BH3 mimetics targeting His224 of Mcl-1.

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