9CFP image
Entry Detail
PDB ID:
9CFP
EMDB ID:
Title:
Cryo-EM structure of S. aureus TarGH in complex with AMP-PNP and targocil-II
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-06-27
Release Date:
2025-04-23
Method Details:
Experimental Method:
Resolution:
2.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Transport permease protein
Chain IDs:A, D (auth: C)
Chain Length:294
Number of Molecules:2
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Description:Teichoic acids export ATP-binding protein TagH
Chain IDs:B, C (auth: D)
Chain Length:264
Number of Molecules:2
Biological Source:Staphylococcus aureus
Primary Citation
Cryo-EM analyses unveil details of mechanism and targocil-II mediated inhibition of S. aureus WTA transporter TarGH.
Nat Commun 16 3224 3224 (2025)
PMID: 40185711 DOI: 10.1038/s41467-025-58202-w

Abstact

Wall teichoic acid (WTA) is a polyol phosphate polymer that covalently decorates peptidoglycan of gram-positive bacteria, including Staphylococcus aureus. Central to WTA biosynthesis is flipping of lipid-linked precursors across the cell membrane by TarGH, a type V ABC transporter. Here, we present cryo-EM structures of S. aureus TarGH in the presence of targocil-II, a promising small-molecule lead with β-lactam antibiotic synergistic action. Targocil-II binds to the extracellular dimerisation interface of TarG, we suggest mimicking flipped but not yet released substrate. In absence of targocil-II and in complex with ATP analogue ATPγS, determined at 2.3 Å resolution, the ATPase active site is allosterically inhibited. This is due to a so far undescribed D-loop conformation, potentially minimizing spurious ATP hydrolysis in the absence of substrate. Targocil-II binding comparatively causes local and remote conformational changes through to the TarH active site, with the D-loop now optimal for ATP hydrolysis. These structures suggest an ability to modulate ATP hydrolysis in a WTA substrate dependent manner and a jammed ATPase cycle as the basis of the observed inhibition by targocil-II. The molecular insights provide an unprecedented basis for development of TarGH targeted therapeutics for treatment of multidrug-resistant S. aureus and other gram-positive bacterial infections.

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