9CFG image
Deposition Date 2024-06-27
Release Date 2025-07-02
Last Version Date 2025-10-01
Entry Detail
PDB ID:
9CFG
Title:
Cryo-EM Refinement of Antibody 19-77 R71V in complex with SARS-CoV-2 HK.3 RBD
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike protein S1
Gene (Uniprot):S
Chain IDs:C (auth: A)
Chain Length:219
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Molecule:heavy chain
Chain IDs:A (auth: H)
Chain Length:115
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:light chain
Chain IDs:B (auth: L)
Chain Length:108
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Optimizing a human monoclonal antibody for better neutralization of SARS-CoV-2.
Nat Commun 16 6195 6195 (2025)
PMID: 40615407 DOI: 10.1038/s41467-025-61472-z

Abstact

SARS-CoV-2 has largely evolved to resist antibody pressure, with each successive viral variant becoming more and more resistant to serum antibodies in the population. This evolution renders all previously authorized anti-spike therapeutic monoclonal antibodies inactive, and it threatens the remaining pipelines against COVID-19. We report herein the isolation of a human monoclonal antibody with a broad but incomplete SARS-CoV-2 neutralization profile, but structural analyses and mutational scanning lead to the engineering of variants that result in greater antibody flexibility while binding to the viral spike. Three such optimized monoclonal antibodies neutralize all SARS-CoV-2 strains tested with much improved potency and breadth, including against subvariants XEC and LP.8.1. The findings of this study not only present antibody candidates for clinical development against COVID-19, but also introduce an engineering approach to improve antibody activity via increasing conformational flexibility.

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Protein

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Disease

Primary Citation of related structures