9CFC image
Deposition Date 2024-06-27
Release Date 2025-08-06
Last Version Date 2025-08-06
Entry Detail
PDB ID:
9CFC
Keywords:
MEMBRANE PROTEIN
Title:
Cryo-EM structure of human kidney V-ATPase state 2
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.47 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9CFC validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase 21 kDa proteolipid subunit
Gene (Uniprot):ATP6V0B
Chain IDs:A (auth: 0)
Chain Length:205
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q99437 Pfam ID:PF00137
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase 16 kDa proteolipid subunit
Gene (Uniprot):ATP6V0C
Chain IDs:B (auth: 1), C (auth: 2), D (auth: 3), E (auth: 4), F (auth: 5), G (auth: 6), H (auth: 7), I (auth: 8), J (auth: 9)
Chain Length:155
Number of Molecules:9
Biological Source:Homo sapiens
UniProt ID:P27449 Pfam ID:PF00137
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase catalytic subunit A
Gene (Uniprot):ATP6V1A
Chain IDs:K (auth: A), L (auth: B), M (auth: C)
Chain Length:617
Number of Molecules:3
Biological Source:Homo sapiens
UniProt ID:P38606 Pfam ID:PF00006, PF22919, PF02874, PF16886
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit B, brain isoform
Gene (Uniprot):ATP6V1B2
Chain IDs:N (auth: D), O (auth: E), P (auth: F)
Chain Length:511
Number of Molecules:3
Biological Source:Homo sapiens
UniProt ID:P21281 Pfam ID:PF22919, PF02874, PF00006
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit D
Gene (Uniprot):ATP6V1D
Chain IDs:Q (auth: G)
Chain Length:247
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q9Y5K8 Pfam ID:PF01813
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit E 1
Gene (Uniprot):ATP6V1E1
Chain IDs:R (auth: H), S (auth: I), T (auth: J)
Chain Length:226
Number of Molecules:3
Biological Source:Homo sapiens
UniProt ID:P36543 Pfam ID:PF01991
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit G 1
Gene (Uniprot):ATP6V1G1
Chain IDs:U (auth: K), V (auth: L), W (auth: M)
Chain Length:118
Number of Molecules:3
Biological Source:Homo sapiens
UniProt ID:O75348 Pfam ID:PF03179
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit F
Gene (Uniprot):ATP6V1F
Chain IDs:X (auth: N)
Chain Length:119
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q16864 Pfam ID:PF01990
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit d 1
Gene (Uniprot):ATP6V0D1
Chain IDs:Y (auth: Q)
Chain Length:351
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P61421 Pfam ID:PF01992
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase 116 kDa subunit a isoform 1
Gene (Uniprot):ATP6V0A1
Chain IDs:Z (auth: R)
Chain Length:837
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q93050 Pfam ID:PF01496
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit e 1
Gene (Uniprot):ATP6V0E1
Chain IDs:AA (auth: S)
Chain Length:81
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:O15342 Pfam ID:PF05493
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribonuclease kappa
Gene (Uniprot):RNASEK
Chain IDs:BA (auth: T)
Chain Length:137
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q6P5S7
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit S1
Gene (Uniprot):ATP6AP1
Chain IDs:CA (auth: U)
Chain Length:470
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q15904 Pfam ID:PF05827, PF20520
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Renin receptor
Gene (Uniprot):ATP6AP2
Chain IDs:DA (auth: V)
Chain Length:350
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:O75787 Pfam ID:PF07850
Ligand Molecules
ADP
Primary Citation
Cryo-EM structure of human kidney V-ATPase state 2
To Be Published ? ? ? (?)
Primary Citation of related structures
9CFC