ISDA

Deposition Date 2024-06-25

Release Date 2025-04-16

Last Version Date 2025-06-11

Entry Detail

PDB ID:

9CDZ

Keywords:

ONCOPROTEIN

Title:

Crystal Structure of MDM2-Peptide Complex

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)
synthetic construct (Taxon ID: 32630)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.72 Å

R-Value Free:

0.27

R-Value Work:

0.22

R-Value Observed:

0.22

Space Group:

P 1 21 1

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase Mdm2
Gene (Uniprot):MDM2
Mutagens:E52A, K53A
Chain IDs:A, C
Chain Length:108
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:Q00987 Pfam ID:PF02201 EC:2.3.2.27

Polymer Type:polypeptide(L)
Molecule:Peptide
Chain IDs:B, D
Chain Length:16
Number of Molecules:2
Biological Source:synthetic construct

Ligand Molecules

Primary Citation

Cyclic peptide structure prediction and design using AlphaFold2

Rettie, S.A, Campbell, K.V, Bera, A.K, Kang, A, Kozlov, S, Bueso, Y.F, De La Cruz, J, Ahlrichs, M, Cheng, S, Gerben, S.R, Lamb, M, Murray, A, Adebomi, V, Zhou, G, DiMaio, F, Ovchinnikov, S, Bhardwaj, G.Show

Nat Commun 16 4730 ? (2025)

DOI: 10.1038/s41467-025-59940-7

Primary Citation of related structures