9CDN image
Deposition Date 2024-06-25
Release Date 2025-08-06
Last Version Date 2025-08-06
Entry Detail
PDB ID:
9CDN
Keywords:
ELECTRON TRANSPORT
Title:
Respiratory supercomplex I+III2 open state
Biological Source:
Source Organism:
Sus scrofa (Taxon ID: 9823)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.47 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9CDN validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 6, mitochondrial
Gene (Uniprot):LOC100524873
Chain IDs:A (auth: 0), MB (auth: Ab)
Chain Length:91
Number of Molecules:2
Biological Source:Sus scrofa
UniProt ID:A0A8D1JI21 Pfam ID:PF02320
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquinol-cytochrome c reductase complex 7.2 kDa protein
Gene (Uniprot):UQCR10
Chain IDs:B (auth: 1), NB (auth: Ac)
Chain Length:64
Number of Molecules:2
Biological Source:Sus scrofa
UniProt ID:A0A8D1J3N6 Pfam ID:PF05365
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1
Gene (Uniprot):UQCRFS1
Chain IDs:C (auth: 2), E (auth: 4), JB (auth: Ae), KB (auth: Af)
Chain Length:299
Number of Molecules:4
Biological Source:Sus scrofa
UniProt ID:F1RNZ1 Pfam ID:PF09165, PF02921, PF00355
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 10
Gene (Uniprot):UQCR11
Chain IDs:D (auth: 3), OB (auth: Ad)
Chain Length:56
Number of Molecules:2
Biological Source:Sus scrofa
UniProt ID:F1SDI2 Pfam ID:PF08997
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 2, mitochondrial
Gene (Uniprot):UQCRC2
Chain IDs:F (auth: 6), BB (auth: v)
Chain Length:453
Number of Molecules:2
Biological Source:Sus scrofa
UniProt ID:F1RPD2 Pfam ID:PF00675, PF05193
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b
Gene (Uniprot):cytb
Chain IDs:G (auth: 7), CB (auth: w)
Chain Length:379
Number of Molecules:2
Biological Source:Sus scrofa
UniProt ID:Q1HBG9 Pfam ID:PF00033, PF00032
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c1
Gene (Uniprot):CYC1
Chain IDs:H (auth: 8), DB (auth: x)
Chain Length:326
Number of Molecules:2
Biological Source:Sus scrofa
UniProt ID:A0A287AZF9 Pfam ID:PF02167
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 7
Gene (Uniprot):UQCRB
Chain IDs:I (auth: 9), EB (auth: y)
Chain Length:111
Number of Molecules:2
Biological Source:Sus scrofa
UniProt ID:A0A286ZPR8 Pfam ID:PF02271
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
Gene (Uniprot):NDUFV1
Chain IDs:AA (auth: B)
Chain Length:128
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1SZP7 Pfam ID:PF01512, PF22461, PF10589
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial
Chain IDs:BA (auth: C)
Chain Length:186
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A480XQH6 Pfam ID:PF00346
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial
Gene (Uniprot):NDUFS3
Chain IDs:CA (auth: D)
Chain Length:264
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A286ZNN4 Pfam ID:PF00329
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
Gene (Uniprot):NDUFV2
Chain IDs:DA (auth: E)
Chain Length:249
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1VRV3 Pfam ID:PF01257
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial
Gene (Uniprot):NDUFS6
Chain IDs:EA (auth: F)
Chain Length:76
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1THU2 Pfam ID:PF10276
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial
Gene (Uniprot):NDUFS1
Chain IDs:HB (auth: G)
Chain Length:122
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A287ARY3 Pfam ID:PF13510, PF10588, PF22117, PF22151, PF00384, PF09326
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial
Gene (Uniprot):NDUFS8
Chain IDs:FA (auth: H)
Chain Length:212
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A286ZUN9 Pfam ID:PF12838
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial
Gene (Uniprot):NDUFS7
Chain IDs:GA (auth: I)
Chain Length:347
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1VTL7 Pfam ID:PF01058
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial
Chain IDs:HA (auth: J)
Chain Length:115
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:G8IFA6 Pfam ID:PF04800
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
Gene (Uniprot):NDUFA12
Chain IDs:IA (auth: K)
Chain Length:98
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1SQP4 Pfam ID:PF05071
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial
Gene (Uniprot):NDUFA9
Chain IDs:JA (auth: L)
Chain Length:606
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1SL07 Pfam ID:PF01370
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7
Gene (Uniprot):NDUFA7
Chain IDs:IB (auth: M)
Chain Length:113
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8W4F7N8 Pfam ID:PF07347
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 isoform X1
Chain IDs:KA (auth: N)
Chain Length:58
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8D0UWW0 Pfam ID:PF04716
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Acyl carrier protein
Chain IDs:LA (auth: O), UA (auth: X)
Chain Length:129
Number of Molecules:2
Biological Source:Sus scrofa
UniProt ID:A0A8D1WW27 Pfam ID:PF00550
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
Gene (Uniprot):NDUFA2
Chain IDs:MA (auth: P)
Chain Length:99
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8D1FN21 Pfam ID:PF05047
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
Chain IDs:NA (auth: Q)
Chain Length:154
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8D0Z0K9 Pfam ID:PF05347
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial
Chain IDs:OA (auth: R)
Chain Length:318
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A480TFA5 Pfam ID:PF15880
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1
Chain IDs:PA (auth: S)
Chain Length:70
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8D0TJQ4 Pfam ID:PF15879
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3
Gene (Uniprot):NDUFA3
Chain IDs:QA (auth: T)
Chain Length:169
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1VPG4 Pfam ID:PF14987
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial
Gene (Uniprot):NDUFA10
Chain IDs:RA (auth: U)
Chain Length:480
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1SIS9 Pfam ID:PF01712
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11
Gene (Uniprot):NDUFA11
Chain IDs:SA (auth: V)
Chain Length:453
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:I3LGM4 Pfam ID:PF02466
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH:ubiquinone oxidoreductase subunit A13
Gene (Uniprot):NDUFA13
Chain IDs:TA (auth: W)
Chain Length:379
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8D0K655 Pfam ID:PF06212
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH:ubiquinone oxidoreductase subunit B2
Gene (Uniprot):NDUFB2
Chain IDs:VA (auth: Y)
Chain Length:111
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8D1G9F4 Pfam ID:PF14813
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3
Gene (Uniprot):NDUFB3
Chain IDs:WA (auth: Z)
Chain Length:114
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8D0INK7 Pfam ID:PF08122
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial
Gene (Uniprot):NDUFB5
Chain IDs:J (auth: a)
Chain Length:189
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1SGC6 Pfam ID:PF09781
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6
Gene (Uniprot):NDUFB6
Chain IDs:K (auth: b)
Chain Length:128
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1UIV8 Pfam ID:PF09782
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial
Gene (Uniprot):NDUFB8
Chain IDs:L (auth: c)
Chain Length:186
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1RWL7 Pfam ID:PF05821
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10
Chain IDs:M (auth: d)
Chain Length:264
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8D0R7A9 Pfam ID:PF10249
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial
Chain IDs:N (auth: e)
Chain Length:249
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8D1EYI7 Pfam ID:PF10183
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial
Chain IDs:O (auth: f)
Chain Length:76
Number of Molecules:1
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 subunit C2
Gene (Uniprot):NDUFC2
Chain IDs:P (auth: g)
Chain Length:122
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A480JRW3 Pfam ID:PF06374
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 5
Gene (Uniprot):NDUFS5
Chain IDs:Q (auth: h)
Chain Length:212
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1VX77 Pfam ID:PF10200
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 2
Gene (Uniprot):MT-ND2
Chain IDs:R (auth: i)
Chain Length:347
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:O79875 Pfam ID:PF00361, PF06444
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 3
Gene (Uniprot):MT-ND3
Chain IDs:S (auth: j)
Chain Length:115
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:O79880 Pfam ID:PF00507
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 4L
Gene (Uniprot):MT-ND4L
Chain IDs:T (auth: k)
Chain Length:98
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:P56632 Pfam ID:PF00420
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 5
Gene (Uniprot):MT-ND5
Chain IDs:XA (auth: l)
Chain Length:606
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:Q9TDR1 Pfam ID:PF00662, PF00361, PF06455
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 6
Gene (Uniprot):MT-ND6
Chain IDs:U (auth: m)
Chain Length:113
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:O79882 Pfam ID:PF00499
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1
Chain IDs:V (auth: n)
Chain Length:58
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1SNY5 Pfam ID:PF08040
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4
Gene (Uniprot):NDUFB4
Chain IDs:W (auth: o)
Chain Length:129
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1T6M0 Pfam ID:PF07225
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
Gene (Uniprot):NDUFB9
Chain IDs:X (auth: p)
Chain Length:99
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:K7GSE5 Pfam ID:PF05347
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 4
Gene (Uniprot):MT-ND4
Chain IDs:Y (auth: q)
Chain Length:154
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:O79881 Pfam ID:PF01059, PF00361
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 1
Gene (Uniprot):MT-ND1
Chain IDs:Z (auth: r)
Chain Length:318
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:O79874 Pfam ID:PF00146
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8
Gene (Uniprot):NDUFA8
Chain IDs:YA (auth: s)
Chain Length:70
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1SLR1 Pfam ID:PF06747
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7
Gene (Uniprot):NDUFB7
Chain IDs:ZA (auth: t)
Chain Length:169
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1SCH1 Pfam ID:PF05676
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 1, mitochondrial
Gene (Uniprot):LOC100156879
Chain IDs:AB (auth: u), GB (auth: 5)
Chain Length:480
Number of Molecules:2
Biological Source:Sus scrofa
UniProt ID:A0A8D0PK14 Pfam ID:PF00675, PF05193
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 8
Gene (Uniprot):LOC100524308
Chain IDs:FB (auth: z), LB (auth: Aa)
Chain Length:82
Number of Molecules:2
Biological Source:Sus scrofa
UniProt ID:A0A8D0SHY6 Pfam ID:PF02939
Ligand Molecules
FES
FMN
HEC
HEM
NDP
SF4
ZMP
Primary Citation
respiratory supercomplex I+III2 open state
To Be Published ? ? ? (?)
Primary Citation of related structures
9CDN