9CD6 image
Deposition Date 2024-06-24
Release Date 2025-08-06
Last Version Date 2025-08-06
Entry Detail
PDB ID:
9CD6
Keywords:
ELECTRON TRANSPORT
Title:
Cryo-EM structure of respiratory supercomplex I in open state
Biological Source:
Source Organism:
Sus scrofa (Taxon ID: 9823)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9CD6 validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
Gene (Uniprot):NDUFV1
Chain IDs:A (auth: B)
Chain Length:128
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1SZP7 Pfam ID:PF01512, PF22461, PF10589
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial
Chain IDs:B (auth: C)
Chain Length:186
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A480XQH6 Pfam ID:PF00346
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial
Gene (Uniprot):NDUFS3
Chain IDs:C (auth: D)
Chain Length:264
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A286ZNN4 Pfam ID:PF00329
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
Gene (Uniprot):NDUFV2
Chain IDs:D (auth: E)
Chain Length:249
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1VRV3 Pfam ID:PF01257
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial
Gene (Uniprot):NDUFS6
Chain IDs:E (auth: F)
Chain Length:76
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1THU2 Pfam ID:PF10276
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial
Gene (Uniprot):NDUFS1
Chain IDs:QA (auth: G)
Chain Length:122
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A287ARY3 Pfam ID:PF13510, PF10588, PF22117, PF22151, PF00384, PF09326
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial
Gene (Uniprot):NDUFS8
Chain IDs:F (auth: H)
Chain Length:212
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A286ZUN9 Pfam ID:PF12838
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial
Gene (Uniprot):NDUFS7
Chain IDs:G (auth: I)
Chain Length:347
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1VTL7 Pfam ID:PF01058
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial
Chain IDs:H (auth: J)
Chain Length:115
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:G8IFA6 Pfam ID:PF04800
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
Gene (Uniprot):NDUFA12
Chain IDs:I (auth: K)
Chain Length:98
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1SQP4 Pfam ID:PF05071
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial
Gene (Uniprot):NDUFA9
Chain IDs:J (auth: L)
Chain Length:606
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1SL07 Pfam ID:PF01370
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7
Gene (Uniprot):NDUFA7
Chain IDs:RA (auth: M)
Chain Length:175
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8W4F7N8 Pfam ID:PF07347
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 isoform X1
Chain IDs:K (auth: N)
Chain Length:58
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8D0UWW0 Pfam ID:PF04716
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Acyl carrier protein
Chain IDs:L (auth: O), U (auth: X)
Chain Length:129
Number of Molecules:2
Biological Source:Sus scrofa
UniProt ID:A0A8D1WW27 Pfam ID:PF00550
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
Gene (Uniprot):NDUFA2
Chain IDs:M (auth: P)
Chain Length:99
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8D1FN21 Pfam ID:PF05047
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
Chain IDs:N (auth: Q)
Chain Length:154
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8D0Z0K9 Pfam ID:PF05347
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial
Chain IDs:O (auth: R)
Chain Length:110
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A480TFA5 Pfam ID:PF15880
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1
Chain IDs:P (auth: S)
Chain Length:249
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8D0TJQ4 Pfam ID:PF15879
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3
Gene (Uniprot):NDUFA3
Chain IDs:Q (auth: T)
Chain Length:169
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1VPG4 Pfam ID:PF14987
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial
Gene (Uniprot):NDUFA10
Chain IDs:R (auth: U)
Chain Length:357
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1SIS9 Pfam ID:PF01712
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11
Gene (Uniprot):NDUFA11
Chain IDs:S (auth: V)
Chain Length:141
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:I3LGM4 Pfam ID:PF02466
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH:ubiquinone oxidoreductase subunit A13
Gene (Uniprot):NDUFA13
Chain IDs:T (auth: W)
Chain Length:144
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8D0K655 Pfam ID:PF06212
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH:ubiquinone oxidoreductase subunit B2
Gene (Uniprot):NDUFB2
Chain IDs:V (auth: Y)
Chain Length:105
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8D1G9F4 Pfam ID:PF14813
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3
Gene (Uniprot):NDUFB3
Chain IDs:W (auth: Z)
Chain Length:114
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8D0INK7 Pfam ID:PF08122
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial
Gene (Uniprot):NDUFB5
Chain IDs:X (auth: a)
Chain Length:189
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1SGC6 Pfam ID:PF09781
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6
Gene (Uniprot):NDUFB6
Chain IDs:SA (auth: b)
Chain Length:128
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1UIV8 Pfam ID:PF09782
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial
Gene (Uniprot):NDUFB8
Chain IDs:Y (auth: c)
Chain Length:186
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1RWL7 Pfam ID:PF05821
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10
Chain IDs:Z (auth: d)
Chain Length:264
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8D0R7A9 Pfam ID:PF10249
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial
Chain IDs:AA (auth: e)
Chain Length:249
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8D1EYI7 Pfam ID:PF10183
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial
Chain IDs:BA (auth: f)
Chain Length:76
Number of Molecules:1
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 subunit C2
Gene (Uniprot):NDUFC2
Chain IDs:CA (auth: g)
Chain Length:122
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A480JRW3 Pfam ID:PF06374
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 5
Gene (Uniprot):NDUFS5
Chain IDs:DA (auth: h)
Chain Length:212
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1VX77 Pfam ID:PF10200
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 2
Gene (Uniprot):MT-ND2
Chain IDs:EA (auth: i)
Chain Length:347
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:O79875 Pfam ID:PF00361, PF06444
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 3
Gene (Uniprot):MT-ND3
Chain IDs:FA (auth: j)
Chain Length:115
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:O79880 Pfam ID:PF00507
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 4L
Gene (Uniprot):MT-ND4L
Chain IDs:GA (auth: k)
Chain Length:98
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:P56632 Pfam ID:PF00420
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 5
Gene (Uniprot):MT-ND5
Chain IDs:HA (auth: l)
Chain Length:606
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:Q9TDR1 Pfam ID:PF00662, PF00361, PF06455
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 6
Gene (Uniprot):MT-ND6
Chain IDs:IA (auth: m)
Chain Length:175
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:O79882 Pfam ID:PF00499
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1
Chain IDs:JA (auth: n)
Chain Length:58
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1SNY5 Pfam ID:PF08040
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4
Gene (Uniprot):NDUFB4
Chain IDs:KA (auth: o)
Chain Length:129
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1T6M0 Pfam ID:PF07225
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
Gene (Uniprot):NDUFB9
Chain IDs:LA (auth: p)
Chain Length:99
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:K7GSE5 Pfam ID:PF05347
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 4
Gene (Uniprot):MT-ND4
Chain IDs:MA (auth: q)
Chain Length:154
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:O79881 Pfam ID:PF01059, PF00361
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 1
Gene (Uniprot):MT-ND1
Chain IDs:NA (auth: r)
Chain Length:110
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:O79874 Pfam ID:PF00146
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8
Gene (Uniprot):NDUFA8
Chain IDs:OA (auth: s)
Chain Length:249
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1SLR1 Pfam ID:PF06747
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7
Gene (Uniprot):NDUFB7
Chain IDs:PA (auth: t)
Chain Length:169
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1SCH1 Pfam ID:PF05676
Ligand Molecules
FES
FMN
NDP
SF4
ZMP
Primary Citation
Cryo-EM structure of respiratory supercomplex I in open state
To Be Published ? ? ? (?)
Primary Citation of related structures
9CD6