9CCD image
Deposition Date 2024-06-21
Release Date 2025-07-16
Last Version Date 2025-07-16
Entry Detail
PDB ID:
9CCD
Keywords:
DNA BINDING PROTEIN
Title:
DeltaNhp10 INO80 bound to S.c 0/40 nucleosome, INO80 core module
Biological Source:
Source Organism:
Saccharomyces cerevisiae (Taxon ID: 4932)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.01 Å
Aggregation State:
CELL
Reconstruction Method:
SINGLE PARTICLE
9CCD validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chromatin-remodeling ATPase INO80
Gene (Uniprot):INO80
Chain IDs:A (auth: Q)
Chain Length:1489
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P53115 Pfam ID:PF13892, PF00176, PF00271
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 5
Gene (Uniprot):ARP5
Chain IDs:B (auth: R)
Chain Length:755
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P53946 Pfam ID:PF00022
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chromatin-remodeling complex subunit IES6
Gene (Uniprot):IES6
Chain IDs:C (auth: S)
Chain Length:166
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P32617 Pfam ID:PF08265
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RuvB-like protein 1
Gene (Uniprot):RVB1
Chain IDs:D (auth: T), F (auth: V), H (auth: X)
Chain Length:463
Number of Molecules:3
Biological Source:Saccharomyces cerevisiae
UniProt ID:Q03940 Pfam ID:PF06068, PF17856
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RuvB-like protein 2
Gene (Uniprot):RVB2
Chain IDs:E (auth: U), G (auth: W), I (auth: Y)
Chain Length:460
Number of Molecules:3
Biological Source:Saccharomyces cerevisiae
UniProt ID:Q12464 Pfam ID:PF06068, PF17856
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ino eighty subunit 2
Gene (Uniprot):IES2
Chain IDs:J (auth: Z)
Chain Length:320
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P40154 Pfam ID:PF04795
Ligand Molecules
ADP
Primary Citation
Autoinhibition imposed by a large conformational switch of INO80 regulates nucleosome positioning
Science ? ? ? (2025)
DOI: 10.1126/science.adr3831
Primary Citation of related structures
9CCD