9CCA image
Deposition Date 2024-06-21
Release Date 2025-12-31
Last Version Date 2026-01-14
Entry Detail
PDB ID:
9CCA
Title:
Cryo-EM structure of a designed pyridoxal phosphate (PLP) synthase fused to a designed circumsporozoite protein antigen from Plasmodium falciparum (CSP-P1-CSP and CSP-P2-CSP)
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.95 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Circumsporozoite protein,Pyridoxal 5'-phosphate synthase subunit Pdx1
Gene (Uniprot):pdx1, CSP
Mutagens:K198R,K289C,S293C in Pdx1 (Uniprot numbering: K83R,K174C,S178C)
Chain IDs:A, B, C, D, E, F, M, N, O, P, Q, R
Chain Length:537
Number of Molecules:12
Biological Source:Plasmodium falciparum
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Circumsporozoite protein,Pyridoxal 5'-phosphate synthase subunit PDX2
Gene (Uniprot):CSP, PDX2
Mutagens:N179Q,N242Q,H310N in Pdx2 (Uniprot numbering: N65Q,N128Q,H196N)
Chain IDs:G, H, I, J, K, L, S, T, U, V, W, X
Chain Length:454
Number of Molecules:12
Biological Source:Plasmodium falciparum
Ligand Molecules
Primary Citation
A Plasmodium-derived nanoparticle vaccine elicits sterile protection against malaria in mice.
Nat Microbiol 11 67 80 (2026)
PMID: 41420060 DOI: 10.1038/s41564-025-02209-y

Abstact

Protein nanoparticles in infectious disease vaccines enable protection through the periodic arrangement of antigens on their surface. These nanoparticles arise from organisms unrelated to the target disease, limiting their role as presentation platforms. Nanoparticles may also be compromised by pre-existing immunity to the nanoparticle carrier and may induce autoimmunity if conserved epitopes exist. Here we developed a potent multivalent malaria vaccine using an engineered Plasmodium falciparum pyridoxal 5'-phosphate (PLP) synthase as a nanoparticle that presents a designed P. falciparum circumsporozoite protein (CSP) and the Plasmodium vivax cell-transversal protein for ookinetes and sporozoites (CelTOS). These engineered vaccines elicited high titres of anti-CSP and anti-CelTOS antibodies, and three doses provided complete sterile protection against malaria in a mouse model. Cryogenic electron microscopy resolved a 2.95-Å resolution structure of the PLP nanoparticle including amino acid changes engineered to stabilize the nanoparticle. PLP synthase has no identifiable human ortholog limiting its propensity for autoimmunity or pre-existing immunity, and the engineered nanoparticles possess desirable manufacturing characteristics. These studies established an effective nanoparticle platform for malaria and infectious disease vaccines.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
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