9CC7 image
Deposition Date 2024-06-20
Release Date 2025-04-16
Last Version Date 2025-04-16
Entry Detail
PDB ID:
9CC7
Keywords:
Title:
Bacteriophage PhiTE extended connector complex
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.14 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Portal protein
Gene (Uniprot):phiTE_209
Chain IDs:I (auth: A), J (auth: B)
Chain Length:507
Number of Molecules:2
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Molecule:PhiTE adaptor protein
Gene (Uniprot):phiTE_218
Chain IDs:A (auth: D), F (auth: C)
Chain Length:175
Number of Molecules:2
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Molecule:PhiTE head completion protein
Gene (Uniprot):phiTE_220
Chain IDs:B (auth: E)
Chain Length:146
Number of Molecules:1
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Molecule:PhiTE tail terminator protein
Gene (Uniprot):phiTE_221
Chain IDs:C (auth: F)
Chain Length:235
Number of Molecules:1
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Molecule:Tail tube protein
Gene (Uniprot):phiTE_223
Chain IDs:D (auth: G), E (auth: H)
Chain Length:160
Number of Molecules:2
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Molecule:Tail sheath protein
Gene (Uniprot):phiTE_222
Chain IDs:G (auth: I), H (auth: J)
Chain Length:473
Number of Molecules:2
Biological Source:Pectobacterium phage phiTE
Ligand Molecules
Primary Citation
Global structural survey of the flagellotropic myophage phi TE infecting agricultural pathogen Pectobacterium atrosepticum.
Nat Commun 16 3257 3257 (2025)
PMID: 40188083 DOI: 10.1038/s41467-025-58514-x

Abstact

Bacteriophages offer a promising alternative to drug-based treatments due to their effectiveness and host specificity. This is particularly important in agriculture as a biocontrol agent of plant diseases. Phage engineering is facilitated by structural knowledge. However, structural information regarding bacteriophages infecting plant pathogens is limited. Here, we present the cryo-EM structure of bacteriophage φTE that infects plant pathogen Pectobacterium atrosepticum. The structure reveals a distinct neck topology compared with other myophages, where tail terminator proteins compensate for reduced connectivity between sheath subunits. A contact network between tail fibers, the sheath initiator, and baseplate wedge proteins provides insights into triggers that transduce conformational changes from the baseplate to the sheath to orchestrate contraction. We observe two distinct oligomeric states of the tape measure protein (TMP), which is six-fold in regions proximal to the N-terminus and throughout most of the tail, while three-fold at the C-terminus, indicating that the TMP may be proteolytically cleaved. Our results provide a structural atlas of the model bacteriophage φTE, enhancing future interpretation of phage host interactions in pectobacteria. We anticipate that our structure will inform rational design of biocontrol agents against plant pathogens that cause diseases such as soft rot and blackleg disease in potatoes.

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Primary Citation of related structures