ISDA

Deposition Date 2024-06-18

Release Date 2025-07-16

Last Version Date 2025-07-16

Entry Detail

PDB ID:

9CB7

Keywords:

DNA BINDING PROTEIN/DNA

Title:

DeltaNhp10 INO80 bound to S.c 0/40 nucleosome, Ino80-Nucleosome

Biological Source:

Source Organism:

Saccharomyces cerevisiae (Taxon ID: 4932)
Xenopus laevis (Taxon ID: 8355)
synthetic construct (Taxon ID: 32630)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

4.04 Å

Aggregation State:

CELL

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H3
Gene (Uniprot):HHT1, HHT2
Chain IDs:A, E
Chain Length:136
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P61830 Pfam ID:PF00125

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H4
Chain IDs:B, F
Chain Length:103
Number of Molecules:2
Biological Source:Xenopus laevis

UniProt ID:P62799 Pfam ID:PF15511

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2A.1
Gene (Uniprot):HTA1
Chain IDs:C, G
Chain Length:132
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P04911 Pfam ID:PF00125, PF16211

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2B.1
Gene (Uniprot):HTB1
Chain IDs:D, H
Chain Length:131
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P02293 Pfam ID:PF00125

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (227-MER)
Chain IDs:I
Chain Length:227
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (227-MER)
Chain IDs:J
Chain Length:227
Number of Molecules:1
Biological Source:synthetic construct

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Chromatin-remodeling ATPase INO80
Gene (Uniprot):INO80
Chain IDs:K (auth: Q)
Chain Length:1489
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P53115 Pfam ID:PF13892, PF00176, PF00271

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ino eighty subunit 2
Gene (Uniprot):IES2
Chain IDs:L (auth: Z)
Chain Length:320
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P40154 Pfam ID:PF04795

Ligand Molecules

Primary Citation

Autoinhibition imposed by a large conformational switch of INO80 regulates nucleosome positioning

Kaur, U, Wu, H, Cheng, Y, Narlikar, G.J.Show

Science ? ? ? (2025)

DOI: 10.1126/science.adr3831

Primary Citation of related structures