ISDA

Deposition Date 2024-06-17

Release Date 2025-06-18

Last Version Date 2025-06-18

Entry Detail

PDB ID:

9CAC

Keywords:

GENE REGULATION

Title:

Cryo-EM structure of the RuvBL lobe of the native human TIP60 complex (composite structure)

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.43 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:E1A-binding protein p400
Gene (Uniprot):EP400
Chain IDs:A
Chain Length:3159
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q96L91 Pfam ID:PF15790, PF07529, PF00176, PF00271

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Vacuolar protein sorting-associated protein 72 homolog
Gene (Uniprot):VPS72
Chain IDs:B
Chain Length:364
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q15906 Pfam ID:PF05764, PF08265

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Enhancer of polycomb homolog 1
Gene (Uniprot):EPC1
Chain IDs:C
Chain Length:836
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9H2F5 Pfam ID:PF10513, PF06752

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RuvB-like 1
Gene (Uniprot):RUVBL1
Chain IDs:D (auth: E), F (auth: G), H (auth: I)
Chain Length:456
Number of Molecules:3
Biological Source:Homo sapiens

UniProt ID:Q9Y265 Pfam ID:PF06068, PF17856

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RuvB-like 2
Gene (Uniprot):RUVBL2
Chain IDs:E (auth: F), G (auth: H), I (auth: J)
Chain Length:463
Number of Molecules:3
Biological Source:Homo sapiens

UniProt ID:Q9Y230 Pfam ID:PF06068, PF17856

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Actin, cytoplasmic 1
Gene (Uniprot):ACTB
Chain IDs:J (auth: K), K (auth: L)
Chain Length:375
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P60709 Pfam ID:PF00022

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Actin-like protein 6A
Gene (Uniprot):ACTL6A
Chain IDs:L (auth: M)
Chain Length:429
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:O96019 Pfam ID:PF00022

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA methyltransferase 1-associated protein 1
Gene (Uniprot):DMAP1
Chain IDs:M (auth: N)
Chain Length:467
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9NPF5 Pfam ID:PF16282, PF05499

Ligand Molecules