ISDA

Deposition Date 2024-06-17

Release Date 2025-06-18

Last Version Date 2025-06-18

Entry Detail

PDB ID:

9CAB

Keywords:

GENE REGULATION

Title:

Cryo-EM structure of human SRCAP-nucleosome complex in the encounter state (composite structure)

Biological Source:

Source Organism:

Xenopus laevis (Taxon ID: 8355)
synthetic construct (Taxon ID: 32630)
Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.94 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Helicase SRCAP
Gene (Uniprot):SRCAP
Chain IDs:A
Chain Length:3230
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q6ZRS2 Pfam ID:PF07529, PF00176, PF00271

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Vacuolar protein sorting-associated protein 72 homolog
Gene (Uniprot):VPS72
Chain IDs:B
Chain Length:364
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q15906 Pfam ID:PF05764, PF08265

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Actin-related protein 6
Gene (Uniprot):ACTR6
Chain IDs:C
Chain Length:396
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9GZN1 Pfam ID:PF00022

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Zinc finger HIT domain-containing protein 1
Gene (Uniprot):ZNHIT1
Chain IDs:D
Chain Length:154
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:O43257 Pfam ID:PF04438

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RuvB-like 1
Gene (Uniprot):RUVBL1
Chain IDs:E, G, I
Chain Length:456
Number of Molecules:3
Biological Source:Homo sapiens

UniProt ID:Q9Y265 Pfam ID:PF06068, PF17856

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RuvB-like 2
Gene (Uniprot):RUVBL2
Chain IDs:F, H, J
Chain Length:463
Number of Molecules:3
Biological Source:Homo sapiens

UniProt ID:Q9Y230 Pfam ID:PF06068, PF17856

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2A type 1
Chain IDs:K (auth: Q), M (auth: S)
Chain Length:128
Number of Molecules:2
Biological Source:Xenopus laevis

UniProt ID:P06897 Pfam ID:PF00125, PF16211

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2B 1.1
Chain IDs:L (auth: R), N (auth: T)
Chain Length:125
Number of Molecules:2
Biological Source:Xenopus laevis

UniProt ID:P02281 Pfam ID:PF00125

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H3.2
Chain IDs:O (auth: U), Q (auth: W)
Chain Length:135
Number of Molecules:2
Biological Source:Xenopus laevis

UniProt ID:P84233 Pfam ID:PF00125

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H4
Chain IDs:P (auth: V), R (auth: X)
Chain Length:102
Number of Molecules:2
Biological Source:Xenopus laevis

UniProt ID:P62799 Pfam ID:PF15511

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (285-MER)
Chain IDs:S (auth: Y)
Chain Length:285
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (285-MER)
Chain IDs:T (auth: Z)
Chain Length:285
Number of Molecules:1
Biological Source:synthetic construct

Ligand Molecules