9C9X image
Deposition Date 2024-06-16
Release Date 2025-07-16
Last Version Date 2025-07-16
Entry Detail
PDB ID:
9C9X
Keywords:
DNA BINDING PROTEIN/DNA
Title:
S.c INO80 in complex with Xenopus 0/80 nucleosome, Nucleosome
Biological Source:
Source Organism:
Xenopus laevis (Taxon ID: 8355)
synthetic construct (Taxon ID: 32630)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.83 Å
Aggregation State:
CELL
Reconstruction Method:
SINGLE PARTICLE
9C9X validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H3
Gene (Uniprot):LOC121398065
Chain IDs:A, E
Chain Length:136
Number of Molecules:2
Biological Source:Xenopus laevis
UniProt ID:A0A310TTQ1 Pfam ID:PF00125
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H4
Chain IDs:B, F
Chain Length:103
Number of Molecules:2
Biological Source:Xenopus laevis
UniProt ID:P62799 Pfam ID:PF15511
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2A
Gene (Uniprot):LOC494591
Chain IDs:C, J (auth: G)
Chain Length:130
Number of Molecules:2
Biological Source:Xenopus laevis
UniProt ID:Q6AZJ8 Pfam ID:PF00125, PF16211
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2B 1.1
Chain IDs:D, G (auth: H)
Chain Length:123
Number of Molecules:2
Biological Source:Xenopus laevis
UniProt ID:P02281 Pfam ID:PF00125
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (227-MER)
Chain IDs:H (auth: I)
Chain Length:227
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (227-MER)
Chain IDs:I (auth: J)
Chain Length:227
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
NA
Primary Citation
Autoinhibition imposed by a large conformational switch of INO80 regulates nucleosome positioning
Science ? ? ? (2025)
DOI: 10.1126/science.adr3831
Primary Citation of related structures
9C9X