9C9V image
Entry Detail
PDB ID:
9C9V
Keywords:
Title:
HBV capsid with compound 3i
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2024-06-16
Release Date:
2024-09-25
Method Details:
Experimental Method:
Resolution:
2.63 Å
R-Value Free:
0.25
R-Value Work:
0.22
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Capsid protein
Mutations:Y132A
Chain IDs:A, B, C, D, E, F
Chain Length:167
Number of Molecules:6
Biological Source:Hepatitis B virus
Ligand Molecules
Primary Citation
Rational Design, Synthesis, and Structure-Activity Relationship of a Novel Isoquinolinone-Based Series of HBV Capsid Assembly Modulators Leading to the Identification of Clinical Candidate AB-836.
J.Med.Chem. 67 16773 16795 (2024)
PMID: 39231272 DOI: 10.1021/acs.jmedchem.4c01568

Abstact

Inhibition of Hepatitis B Virus (HBV) replication by small molecules that modulate capsid assembly and the encapsidation of pgRNA and viral polymerase by HBV core protein is a clinically validated approach toward the development of new antivirals. Through definition of a minimal pharmacophore, a series of isoquinolinone-based capsid assembly modulators (CAMs) was identified. Structural biology analysis revealed that lead molecules possess a unique binding mode, exploiting electrostatic interactions with accessible phenylalanine and tyrosine residues. Key analogs demonstrated excellent primary potency, absorption, distribution, metabolism, and excretion (ADME) and pharmacokinetic properties, and efficacy in a mouse model of HBV. The optimized lead also displayed potent inhibition of capsid uncoating in HBV-infected HepG2 cells expressing the sodium-taurocholate cotransporting polypeptide (NTCP) receptor, affecting the generation of HBsAg and cccDNA establishment. Based on these results, isoquinolinone derivative AB-836 was advanced into clinical development. In Phase 1b trials, AB-836 demonstrated >3 log10 reduction in serum HBV DNA, however, further development was discontinued due to the observation of incidental alanine aminotransferase (ALT) elevations.

Legend

Protein

Chemical

Disease

Primary Citation of related structures