ISDA

Deposition Date 2024-06-15

Release Date 2025-07-16

Last Version Date 2025-07-16

Entry Detail

PDB ID:

9C9S

Keywords:

DNA BINDING PROTEIN/DNA

Title:

S.c INO80 in complex with S.c 0/40 nucleosome, Class 1

Biological Source:

Source Organism:

Saccharomyces cerevisiae (Taxon ID: 4932)
Xenopus laevis (Taxon ID: 8355)
synthetic construct (Taxon ID: 32630)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.09 Å

Aggregation State:

CELL

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H3
Gene (Uniprot):HHT1, HHT2
Chain IDs:K (auth: A), O (auth: E)
Chain Length:136
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P61830 Pfam ID:PF00125

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H4
Chain IDs:L (auth: B), P (auth: F)
Chain Length:103
Number of Molecules:2
Biological Source:Xenopus laevis

UniProt ID:P62799 Pfam ID:PF15511

Polymer Type:polypeptide(L)
Molecule:Histone H2A
Chain IDs:M (auth: C), Q (auth: G)
Chain Length:132
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

Polymer Type:polypeptide(L)
Molecule:Histone H2B
Chain IDs:N (auth: D), R (auth: H)
Chain Length:131
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (227-MER)
Chain IDs:S (auth: I)
Chain Length:227
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (227-MER)
Chain IDs:T (auth: J)
Chain Length:227
Number of Molecules:1
Biological Source:synthetic construct

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Chromatin-remodeling ATPase INO80
Gene (Uniprot):INO80
Chain IDs:A (auth: Q)
Chain Length:1489
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P53115 Pfam ID:PF13892, PF00176, PF00271

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Actin-related protein 5
Gene (Uniprot):ARP5
Chain IDs:B (auth: R)
Chain Length:755
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P53946 Pfam ID:PF00022

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Chromatin-remodeling complex subunit IES6
Gene (Uniprot):IES6
Chain IDs:C (auth: S)
Chain Length:166
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P32617 Pfam ID:PF08265

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RuvB-like protein 1
Gene (Uniprot):RVB1
Chain IDs:D (auth: T), F (auth: V), H (auth: X)
Chain Length:463
Number of Molecules:3
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q03940 Pfam ID:PF06068, PF17856

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RuvB-like protein 2
Gene (Uniprot):RVB2
Chain IDs:E (auth: U), G (auth: W), I (auth: Y)
Chain Length:471
Number of Molecules:3
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q12464 Pfam ID:PF06068, PF17856

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ino eighty subunit 2
Gene (Uniprot):IES2
Chain IDs:J (auth: Z)
Chain Length:320
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P40154 Pfam ID:PF04795

Ligand Molecules

ADP

Primary Citation

Autoinhibition imposed by a large conformational switch of INO80 regulates nucleosome positioning

Kaur, U, Wu, H, Cheng, Y, Narlikar, G.J.Show

Science ? ? ? (2025)

DOI: 10.1126/science.adr3831

Primary Citation of related structures