9C99 image
Deposition Date 2024-06-13
Release Date 2025-08-06
Last Version Date 2025-09-10
Entry Detail
PDB ID:
9C99
Keywords:
Title:
Crystal structure of AprG complexed with a two-carbon amino sugar fragment (acetamidoacetaldehyde)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 2 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:AprG
Chain IDs:A, B
Chain Length:339
Number of Molecules:2
Biological Source:Streptoalloteichus tenebrarius
Primary Citation
Structure-Guided Mechanistic Investigation of Stereochemical Inversion during the Octose Formation Catalyzed by an Atypical Transaldolase AprG in the Biosynthesis of Apramycin.
Acs Catalysis 15 13778 13786 (2025)
PMID: 40855890 DOI: 10.1021/acscatal.5c03420

Abstact

Transaldolases are essential enzymes across all life domains, facilitating the exchange of aldol fragments in metabolic processes. AprG, a transaldolase in the apramycin biosynthetic pathway, catalyzes the incorporation of C7' and C8' moieties into the bicyclic octose core. Unlike canonical transaldolases, the AprG product exhibits unique stereochemical inversion, whose mechanism remains unclear. Here, by taking snapshots of AprG at different stages of the reaction, we identified active site residues essential for each reaction step. Strikingly, we discovered a 7'-epimer of the AprG product, directly implicating this inversion in the enzyme's mechanism and uncovering a key aspect of product inhibition. This unexpected epimer sheds a light on the stereochemical plasticity of transaldolases. Additionally, donor analogue studies provided insights into substrate recognition. These findings enhance our mechanistic understanding of AprG and suggest strategies for engineering biocatalysts with tailored stereochemical properties. More broadly, this work provides a framework for modifying transaldolase activity, expanding its potential applications in chemoenzymatic synthesis and metabolic engineering.

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