9C8V image
Deposition Date 2024-06-13
Release Date 2024-09-04
Last Version Date 2024-12-18
Entry Detail
PDB ID:
9C8V
Keywords:
Title:
Human DNA polymerase alpha/primase - CHAPSO (4 mM)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.39 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DNA primase small subunit
Gene (Uniprot):PRIM1
Chain IDs:A
Chain Length:412
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:DNA primase large subunit
Gene (Uniprot):PRIM2
Chain IDs:B
Chain Length:434
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:DNA polymerase alpha catalytic subunit
Gene (Uniprot):POLA1
Chain IDs:C
Chain Length:1119
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:DNA polymerase alpha subunit B
Gene (Uniprot):POLA2
Chain IDs:D
Chain Length:444
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Small LEA proteins mitigate air-water interface damage to fragile cryo-EM samples during plunge freezing.
Nat Commun 15 7705 7705 (2024)
PMID: 39231985 DOI: 10.1038/s41467-024-52091-1

Abstact

Air-water interface (AWI) interactions during cryo-electron microscopy (cryo-EM) sample preparation cause significant sample loss, hindering structural biology research. Organisms like nematodes and tardigrades produce Late Embryogenesis Abundant (LEA) proteins to withstand desiccation stress. Here we show that these LEA proteins, when used as additives during plunge freezing, effectively mitigate AWI damage to fragile multi-subunit molecular samples. The resulting high-resolution cryo-EM maps are comparable to or better than those obtained using existing AWI damage mitigation methods. Cryogenic electron tomography reveals that particles are localized at specific interfaces, suggesting LEA proteins form a barrier at the AWI. This interaction may explain the observed sample-dependent preferred orientation of particles. LEA proteins offer a simple, cost-effective, and adaptable approach for cryo-EM structural biologists to overcome AWI-related sample damage, potentially revitalizing challenging projects and advancing the field of structural biology.

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