9C8U image
Deposition Date 2024-06-13
Release Date 2024-09-04
Last Version Date 2025-05-28
Entry Detail
PDB ID:
9C8U
Title:
Human PRC2 - RvLEAM (short) (1:6 molar ratio), cross-linked 10 min
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Isoform 2 of Histone-lysine N-methyltransferase EZH2
Gene (Uniprot):EZH2
Chain IDs:D (auth: A)
Chain Length:750
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Polycomb protein SUZ12
Gene (Uniprot):SUZ12
Chain IDs:A (auth: B)
Chain Length:739
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Polycomb protein EED
Gene (Uniprot):EED
Chain IDs:B (auth: C)
Chain Length:367
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:RBAP48
Gene (Uniprot):RBBP4
Chain IDs:C (auth: D)
Chain Length:425
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Protein Jumonji
Gene (Uniprot):JARID2
Chain IDs:E
Chain Length:31
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Zinc finger protein AEBP2
Gene (Uniprot):AEBP2
Chain IDs:F
Chain Length:294
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Small LEA proteins mitigate air-water interface damage to fragile cryo-EM samples during plunge freezing.
Nat Commun 15 7705 7705 (2024)
PMID: 39231985 DOI: 10.1038/s41467-024-52091-1

Abstact

Air-water interface (AWI) interactions during cryo-electron microscopy (cryo-EM) sample preparation cause significant sample loss, hindering structural biology research. Organisms like nematodes and tardigrades produce Late Embryogenesis Abundant (LEA) proteins to withstand desiccation stress. Here we show that these LEA proteins, when used as additives during plunge freezing, effectively mitigate AWI damage to fragile multi-subunit molecular samples. The resulting high-resolution cryo-EM maps are comparable to or better than those obtained using existing AWI damage mitigation methods. Cryogenic electron tomography reveals that particles are localized at specific interfaces, suggesting LEA proteins form a barrier at the AWI. This interaction may explain the observed sample-dependent preferred orientation of particles. LEA proteins offer a simple, cost-effective, and adaptable approach for cryo-EM structural biologists to overcome AWI-related sample damage, potentially revitalizing challenging projects and advancing the field of structural biology.

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Primary Citation of related structures