9C7T image
Entry Detail
PDB ID:
9C7T
EMDB ID:
Title:
PP2A:B55-Eya3 substrate complex
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-06-11
Release Date:
2025-05-21
Method Details:
Experimental Method:
Resolution:
2.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform
Chain IDs:A
Chain Length:584
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform
Chain IDs:B
Chain Length:451
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
Chain IDs:C
Chain Length:311
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Eyes absent homolog 3
Chain IDs:D
Chain Length:52
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MLL C LEU modified residue
Primary Citation
Cryo-EM structures of PP2A:B55 with p107 and Eya3 define substrate recruitment.
Nat.Struct.Mol.Biol. ? ? ? (2025)
PMID: 40247147 DOI: 10.1038/s41594-025-01535-3

Abstact

Phosphoprotein phosphatases (PPPs) achieve specificity by binding substrates and regulators using PPP-specific short motifs. Protein phosphatase 2A (PP2A) is a highly conserved phosphatase that regulates cell signaling and is a tumor suppressor. Here, we use cryo-electron microscopy and nuclear magnetic resonance (NMR) spectroscopy to investigate the mechanisms of human p107 substrate and Eya3 regulator recruitment to the PP2A:B55 holoenzyme. We show that, while they associate with B55 using a common set of interaction pockets, the mechanism of substrate and regulator binding differs and is distinct from that observed for PP2A:B56 and other PPPs. We also identify the core B55 recruitment motif in Eya3 proteins, a sequence conserved amongst the Eya family. Lastly, using NMR-based dephosphorylation assays, we demonstrate how B55 recruitment directs PP2A:B55 fidelity through the selective dephosphorylation of specific phosphosites. As PP2A:B55 orchestrates mitosis and DNA damage repair, these data provide a roadmap for pursuing new avenues to therapeutically target this complex by individually blocking a subset of regulators that use different B55 interaction sites.

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Primary Citation of related structures