9C6Y image
Deposition Date 2024-06-10
Release Date 2025-10-08
Last Version Date 2025-10-08
Entry Detail
PDB ID:
9C6Y
Keywords:
VIRAL PROTEIN/IMMUNE SYSTEM
Title:
Crystal structure of SARS-CoV-2 XBB.1.5 RBD bound to COV2-3906 Fab
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Severe acute respiratory syndrome coronavirus (Taxon ID: 2901879)
Host Organism:
Cricetulus griseus
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.68 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
9C6Y validation report
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Heavy chain of COV2-3906 Fab
Chain IDs:A, C
Chain Length:225
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Light chain of COV2-3906 Fab
Chain IDs:B, D
Chain Length:216
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike protein S2'
Gene (Uniprot):S
Chain IDs:E, F
Chain Length:216
Number of Molecules:2
Biological Source:Severe acute respiratory syndrome coronavirus
UniProt ID:P0DTC2 Pfam ID:PF09408
Ligand Molecules
A2G
CL
NAG
SO4
Primary Citation
Epitope-focused discovery of SARS-CoV-2 antibodies that potently neutralize Omicron variants
To Be Published ? ? ? (?)
Primary Citation of related structures
9C6Y
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