9C2D image
Deposition Date 2024-05-30
Release Date 2025-02-05
Last Version Date 2025-08-20
Entry Detail
PDB ID:
9C2D
Keywords:
Title:
Bacteriophage Sf14 Capsid Icosahedral reconstruction
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Major capsid protein
Gene (Uniprot):Sf14_gp34
Chain IDs:A, B, C, D, E, F, G, H, I
Chain Length:367
Number of Molecules:9
Biological Source:Shigella phage Sf14
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Structural protein
Gene (Uniprot):Sf14_gp33
Chain IDs:J, K, L, M, N, O, P, Q, R
Chain Length:125
Number of Molecules:9
Biological Source:Shigella phage Sf14
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tail protein
Gene (Uniprot):Sf14_gp20
Chain IDs:S
Chain Length:372
Number of Molecules:1
Biological Source:Shigella phage Sf14
Ligand Molecules
Primary Citation
The structure of Shigella virus Sf14 reveals the presence of two decoration proteins and two long tail fibers.
Commun Biol 8 222 222 (2025)
PMID: 39939755 DOI: 10.1038/s42003-025-07668-x

Abstact

Bacteriophage Sf14 infects the human pathogen Shigella flexneri. A previous low-resolution structure suggested the presence of a decoration protein on its T = 9 icosahedral capsid. Here, we determined high-resolution structures of the Sf14 capsid and neck, along with a moderate-resolution structure of the whole Sf14 tail and baseplate. These structures indicate the capsid has not one, but two different types of decoration proteins: a trimeric β-tulip lattice that covers the entire capsid and a set of Hoc-like proteins that bind preferentially to hexamers at the quasi-3-fold axes of symmetry. The neck also contains two sets of whiskers oriented in opposite directions, and the tail has two types of long tail fibers which may bind different receptors. Based on homology and phylogenetic analysis, Sf14 may be the product of multiple horizontal gene transfer events. The structures presented here can be used to investigate further hypotheses of phage structure-function relationships and structural diversity.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback