9C14 image
Deposition Date 2024-05-28
Release Date 2025-08-06
Last Version Date 2025-08-20
Entry Detail
PDB ID:
9C14
Title:
Structure of the CopC-like domain of YcnJ
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.23
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Copper transport protein YcnJ
Gene (Uniprot):cutJ
Chain IDs:A
Chain Length:97
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Primary Citation
Copper acquisition in Bacillus subtilis involves Cu(II) exchange between YcnI and YcnJ.
J.Biol.Chem. 301 110480 110480 (2025)
PMID: 40669668 DOI: 10.1016/j.jbc.2025.110480

Abstact

The transition metal copper is biologically essential across all three domains of life. Several copper-dependent proteins and enzymes produced by the Gram-positive bacterium Bacillus subtilis have been characterized. However, many questions remain about how copper is recognized and trafficked to metalate cuproproteins. The ycnKJI operon in B. subtilis encodes a suite of proteins implicated in copper uptake and regulation, including the copper-binding protein YcnI and the putative copper importer YcnJ. Here, we demonstrate that one of the extracellular domains within YcnJ (YcnJCopC) binds Cu(II) in 1:1 stoichiometry with high affinity using a histidine brace motif. Biochemical results reveal that YcnJCopC and YcnI can exchange Cu(II). Genetic studies reveal that loss of either YcnI or YcnJ, or mutation of the key residues required for Cu(II)-binding, leads to a growth defect under conditions of copper limitation. Together, these data suggest that the Cu(II)-binding sites in both YcnI and YcnJ may contribute to efficient import under Cu limited conditions. Our results support a model in which YcnI may sequester Cu(II) from YcnJ, serving a regulatory role to limit the amount of copper that enters the cytoplasm and allowing Cu(II) to be stored for later import on the outer face of the membrane. This transfer of Cu(II) between extracellular domains of membrane-bound proteins represents a potential new paradigm in bacterial copper usage.

Legend

Protein

Chemical

Disease

Primary Citation of related structures