9C0F image
Deposition Date 2024-05-25
Release Date 2025-01-29
Last Version Date 2025-01-29
Entry Detail
PDB ID:
9C0F
Title:
piggyBat transposase protein-DNA complex
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (35-MER)
Chain IDs:A
Chain Length:35
Number of Molecules:1
Biological Source:Myotis lucifugus
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (35-MER)
Chain IDs:B
Chain Length:35
Number of Molecules:1
Biological Source:Myotis lucifugus
Polymer Type:polypeptide(L)
Molecule:piggyBat transposase
Chain IDs:C, D
Chain Length:578
Number of Molecules:2
Biological Source:Myotis lucifugus
Ligand Molecules
Primary Citation
Activity of the mammalian DNA transposon piggyBat from Myotis lucifugus is restricted by its own transposon ends.
Nat Commun 16 458 458 (2025)
PMID: 39774116 DOI: 10.1038/s41467-024-55784-9

Abstact

Members of the piggyBac superfamily of DNA transposons are widely distributed in host genomes ranging from insects to mammals. The human genome has retained five piggyBac-derived genes as domesticated elements although they are no longer mobile. Here, we have investigated the transposition properties of piggyBat from Myotis lucifugus, the only known active mammalian DNA transposon, and show that its low activity in human cells is due to subterminal inhibitory DNA sequences. Activity can be dramatically improved by their removal, suggesting the existence of a mechanism for the suppression of transposon activity. The cryo-electron microscopy structure of the piggyBat transposase pre-synaptic complex showed an unexpected mode of DNA binding and recognition using C-terminal domains that are topologically different from those of the piggyBac transposase. Here we show that structure-based rational re-engineering of the transposase through the removal of putative phosphorylation sites and a changed domain organization - in combination with truncated transposon ends - results in a transposition system that is at least 100-fold more active than wild-type piggyBat.

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Disease

Primary Citation of related structures