9BZ4 image
Deposition Date 2024-05-24
Release Date 2025-01-22
Last Version Date 2025-02-12
Entry Detail
PDB ID:
9BZ4
Title:
Crystal structure of the C2 and GAP domains of human p120RasGAP
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.45 Å
R-Value Free:
0.28
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ras GTPase-activating protein 1
Gene (Uniprot):RASA1
Chain IDs:A, B, C, D
Chain Length:468
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
The C2 domain augments Ras GTPase-activating protein catalytic activity.
Proc.Natl.Acad.Sci.USA 122 e2418433122 e2418433122 (2025)
PMID: 39899710 DOI: 10.1073/pnas.2418433122

Abstact

Regulation of Ras GTPases by GTPase-activating proteins (GAPs) is essential for their normal signaling. Nine of the ten GAPs for Ras contain a C2 domain immediately proximal to their canonical GAP domain, and in RasGAP (p120GAP, p120RasGAP; RASA1) mutation of this domain is associated with vascular malformations in humans. Here, we show that the C2 domain of RasGAP is required for full catalytic activity toward Ras. Analyses of the RasGAP C2-GAP crystal structure, AlphaFold models, and sequence conservation reveal direct C2 domain interaction with the Ras allosteric lobe. This is achieved by an evolutionarily conserved surface centered around RasGAP residue R707, point mutation of which impairs the catalytic advantage conferred by the C2 domain in vitro. In mice, R707C mutation phenocopies the vascular and signaling defects resulting from constitutive disruption of the RASA1 gene. In SynGAP, mutation of the equivalent conserved C2 domain surface impairs catalytic activity. Our results indicate that the C2 domain is required to achieve full catalytic activity of GAPs for Ras.

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