9BXY image
Entry Detail
PDB ID:
9BXY
Keywords:
Title:
CRYSTAL STRUCTURE OF HIV-1 LM/HS CLADE A/E CRF01 GP120 CORE IN COMPLEX WITH DL-III-117
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2024-05-23
Release Date:
2025-04-02
Method Details:
Experimental Method:
Resolution:
2.11 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:HIV-1 LM/HS clade A/E CRF01 gp120 core
Mutations:H61Y, Q105H, V108I, H375S, N474D, I475M, K476R
Chain IDs:A
Chain Length:355
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Primary Citation
Optimization of a Piperidine CD4-Mimetic Scaffold Sensitizing HIV-1 Infected Cells to Antibody-Dependent Cellular Cytotoxicity.
Acs Med.Chem.Lett. 15 1961 1969 (2024)
PMID: 39563795 DOI: 10.1021/acsmedchemlett.4c00403

Abstact

The ability of the HIV-1 accessory proteins Nef and Vpu to decrease CD4 protects infected cells from antibody-dependent cellular cytotoxicity (ADCC) by limiting the exposure of vulnerable epitopes to envelope glycoprotein (Env). Small-molecule CD4 mimetics (CD4mcs) based on piperidine scaffolds represent a new family of agents capable of sensitizing HIV-1-infected cells to ADCC by exposing CD4-induced (CD4i) epitopes on Env that are recognized by non-neutralizing antibodies which are abundant in plasma of people living with HIV. Here, we employed the combined methods of parallel synthesis, structure-based design, and optimization to generate a new line of piperidine-based CD4mcs, which sensitize HIV-1 infected cells to ADCC activity. The X-ray crystallographic study of the CD4mcs within the gp120 residues suggests that the positioning of the CD4mc inside the Phe43 cavity and synergistic contact of the CD4mc with the β20-21 loop and the α1-helix lead to improved antiviral activity.

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Primary Citation of related structures