9BWM image
Deposition Date 2024-05-21
Release Date 2025-03-12
Last Version Date 2025-03-12
Entry Detail
PDB ID:
9BWM
Keywords:
Title:
Neutron Structure of Oxidized Tyr34Phe MnSOD
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.28 Å
R-Value Free:
0.27
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 61 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Superoxide dismutase [Mn], mitochondrial
Gene (Uniprot):SOD2
Mutations:Y34F
Chain IDs:A, B
Chain Length:199
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
The role of Tyr34 in proton coupled electron transfer and product inhibition of manganese superoxide dismutase.
Nat Commun 16 1887 1887 (2025)
PMID: 39987263 DOI: 10.1038/s41467-025-57180-3

Abstact

Human manganese superoxide dismutase (MnSOD) plays a crucial role in controlling levels of reactive oxygen species (ROS) by converting superoxide (O 2 ∙ -) to molecular oxygen (O2) and hydrogen peroxide (H2O2) with proton-coupled electron transfers (PCETs). A key catalytic residue, Tyr34, determines the activity of human MnSOD and also becomes post-translationally inactivated by nitration in various diseases associated with mitochondrial dysfunction. Tyr34 has an unusual pKa due to its proximity to the Mn metal and undergoes cyclic deprotonation and protonation events to promote the electron transfers of MnSOD. Neutron diffraction, X-ray spectroscopy, and quantum chemistry calculations in oxidized, reduced and product inhibited enzymatic states shed light on the role of Tyr34 in MnSOD catalysis. The data identify the contributions of Tyr34 in MnSOD activity that support mitochondrial function and give a thorough characterization of how a single tyrosine modulates PCET catalysis. Product inhibition occurs by an associative displacement mechanism.

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Primary Citation of related structures