9BUQ image
Entry Detail
PDB ID:
9BUQ
EMDB ID:
EMD-44916
Keywords:
RIBOSOME
Title:
Single particle cryoEM structure of the Pf80S ribosome in the POST state (nrt with P- and E-site tRNA)
Biological Source:
Source Organism:
Plasmodium falciparum 3D7
PDB Version:
Deposition Date:
2024-05-17
Release Date:
2025-05-28
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9BUQ validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L24
Chain IDs:ZB (auth: A0)
Chain Length:162
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IEM3 Pfam ID:PF01246
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L27
Chain IDs:LA (auth: A1)
Chain Length:146
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IKM5 Pfam ID:PF01777
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L28
Chain IDs:MA (auth: A2)
Chain Length:127
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IHU0 Pfam ID:PF01778
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L35
Chain IDs:OB (auth: A3)
Chain Length:124
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IIB4 Pfam ID:PF00831
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L29
Chain IDs:NA (auth: A4)
Chain Length:67
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:C6S3J6 Pfam ID:PF01779
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L7
Chain IDs:PB (auth: A5)
Chain Length:257
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:O97250 Pfam ID:PF08079, PF00327
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L30e
Chain IDs:OA (auth: A6)
Chain Length:108
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IJK8 Pfam ID:PF01248
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L31
Chain IDs:PA (auth: A7)
Chain Length:120
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8I463 Pfam ID:PF01198
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L32
Chain IDs:RA (auth: A8)
Chain Length:131
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8I3B0 Pfam ID:PF01655
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L35ae
Chain IDs:SA (auth: A9)
Chain Length:140
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IHT9 Pfam ID:PF01247
Polymer Type:polyribonucleotide
Description:28S ribosomal RNA
Chain IDs:HA (auth: AA)
Chain Length:3788
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
Polymer Type:polyribonucleotide
Description:5S ribosomal RNA
Chain IDs:JA (auth: AB)
Chain Length:112
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
Polymer Type:polyribonucleotide
Description:5.8S ribosomal RNA
Chain IDs:IA (auth: AC)
Chain Length:159
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L2
Chain IDs:QB (auth: AD)
Chain Length:260
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8I3T9 Pfam ID:PF00181, PF03947
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L3
Chain IDs:RB (auth: AE)
Chain Length:386
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IJC6 Pfam ID:PF00297
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L4
Chain IDs:SB (auth: AF)
Chain Length:128
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8I431 Pfam ID:PF00573, PF14374
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L11a
Chain IDs:TB (auth: AG)
Chain Length:173
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IBQ6 Pfam ID:PF00281, PF00673
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L6
Chain IDs:VB (auth: AH)
Chain Length:190
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IE85 Pfam ID:PF00347
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L6
Chain IDs:BB (auth: AI)
Chain Length:104
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:A0A5K1K8V8 Pfam ID:PF01159
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L7a
Chain IDs:CB (auth: AJ)
Chain Length:283
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8ILL2 Pfam ID:PF01248
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L13
Chain IDs:EB (auth: AK)
Chain Length:202
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IJZ7 Pfam ID:PF00572
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L13
Chain IDs:KA (auth: AL)
Chain Length:215
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IAX6 Pfam ID:PF01294
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L23, putative
Chain IDs:FB (auth: AM)
Chain Length:139
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IE09 Pfam ID:PF00238
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L14
Chain IDs:QA (auth: AN)
Chain Length:165
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8ILE8 Pfam ID:PF01929
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L27a
Chain IDs:HB (auth: AO)
Chain Length:148
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:C6KT23 Pfam ID:PF00828
Protein Blast
Polymer Type:polypeptide(L)
Description:Ribosomal protein L15
Chain IDs:YA (auth: AP)
Chain Length:205
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:C0H4A6 Pfam ID:PF00827
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L10
Chain IDs:IB (auth: AQ)
Chain Length:219
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8ILV2 Pfam ID:PF00252
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L5
Chain IDs:JB (auth: AR)
Chain Length:294
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8ILL3 Pfam ID:PF17144, PF14204
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L18-2
Chain IDs:GB (auth: AS)
Chain Length:187
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:C0H5G3 Pfam ID:PF17135
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L19
Chain IDs:MB (auth: AT)
Chain Length:182
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:C6KSY6 Pfam ID:PF01280
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L18a
Chain IDs:UB (auth: AU)
Chain Length:184
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IDS6 Pfam ID:PF01775
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L21
Chain IDs:WB (auth: AV)
Chain Length:161
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8ILK3 Pfam ID:PF01157
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L17
Chain IDs:KB (auth: AW)
Chain Length:173
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IDI5 Pfam ID:PF00237
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L22
Chain IDs:YB (auth: AX)
Chain Length:139
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IB51 Pfam ID:PF01776
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L23
Chain IDs:LB (auth: AY)
Chain Length:190
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IE82 Pfam ID:PF03939, PF00276
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L26
Chain IDs:NB (auth: AZ)
Chain Length:126
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:O77364 Pfam ID:PF16906, PF00467
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L34
Chain IDs:TA (auth: Aa)
Chain Length:3788
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IBY4 Pfam ID:PF01199
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L36
Chain IDs:UA (auth: Ab)
Chain Length:112
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8I713 Pfam ID:PF01158
Protein Blast
Polymer Type:polypeptide(L)
Description:Ribosomal protein L37
Chain IDs:DB (auth: Ac)
Chain Length:159
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:C0H4L5 Pfam ID:PF01907
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L38
Chain IDs:VA (auth: Ad)
Chain Length:260
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8II62 Pfam ID:PF01781
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L39
Chain IDs:WA (auth: Ae)
Chain Length:386
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:C0H4H3 Pfam ID:PF00832
Protein Blast
Polymer Type:polypeptide(L)
Description:Ubiquitin-60S ribosomal protein L40
Chain IDs:XA (auth: Af)
Chain Length:128
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8ID50 Pfam ID:PF00240, PF01020
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L41
Chain IDs:XB (auth: Ag)
Chain Length:173
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:C6S3G4 Pfam ID:PF05162
Protein Blast
Polymer Type:polypeptide(L)
Description:Large ribosomal subunit protein eL43
Chain IDs:ZA (auth: Ah)
Chain Length:190
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:O96184 Pfam ID:PF01780
Protein Blast
Polymer Type:polypeptide(L)
Description:Large ribosomal subunit protein eL42
Chain IDs:AB (auth: Ai)
Chain Length:104
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:O97231 Pfam ID:PF00935
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S24
Chain IDs:A (auth: S1)
Chain Length:133
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8I3R6 Pfam ID:PF01282
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S25
Chain IDs:B (auth: S2)
Chain Length:105
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8ILN8 Pfam ID:PF03297
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S26
Chain IDs:C (auth: S3)
Chain Length:107
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:O96258 Pfam ID:PF01283
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S27
Chain IDs:D (auth: S4)
Chain Length:82
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IEN2 Pfam ID:PF01667
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S28e
Chain IDs:E (auth: S5)
Chain Length:67
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IKL9 Pfam ID:PF01200
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S30
Chain IDs:F (auth: S6)
Chain Length:58
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:O96269 Pfam ID:PF04758
Polymer Type:polyribonucleotide
Description:E-site tRNA
Chain IDs:G (auth: S7)
Chain Length:74
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
Polymer Type:polyribonucleotide
Description:P-site tRNA
Chain IDs:AC (auth: S9)
Chain Length:76
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
Polymer Type:polyribonucleotide
Description:18S ribosomal RNA
Chain IDs:H (auth: SA)
Chain Length:2092
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S3a
Chain IDs:I (auth: SB)
Chain Length:262
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:O97313 Pfam ID:PF01015
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein SA
Chain IDs:J (auth: SC)
Chain Length:263
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IJD4 Pfam ID:PF00318
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S3
Chain IDs:K (auth: SD)
Chain Length:221
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IKH8 Pfam ID:PF07650, PF00189
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S9
Chain IDs:L (auth: SE)
Chain Length:189
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8I3R0 Pfam ID:PF00163, PF01479
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S4
Chain IDs:M (auth: SF)
Chain Length:261
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IIU8 Pfam ID:PF08071, PF00900, PF00467, PF16121
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S5
Chain IDs:N (auth: SG)
Chain Length:272
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IL02 Pfam ID:PF00333, PF03719
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S6
Chain IDs:O (auth: SH)
Chain Length:306
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IDR9 Pfam ID:PF01092
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S5
Chain IDs:P (auth: SI)
Chain Length:195
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IBN5 Pfam ID:PF00177
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S7
Chain IDs:Q (auth: SJ)
Chain Length:194
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IET7 Pfam ID:PF01251
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S15A
Chain IDs:R (auth: SK)
Chain Length:130
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:O77395 Pfam ID:PF00410
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S8
Chain IDs:S (auth: SL)
Chain Length:218
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IM10 Pfam ID:PF01201
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S16
Chain IDs:T (auth: SM)
Chain Length:144
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:A0A0L7M7C8 Pfam ID:PF00380
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S20e
Chain IDs:U (auth: SN)
Chain Length:118
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IK02 Pfam ID:PF00338
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S10
Chain IDs:V (auth: SO)
Chain Length:137
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IBQ5 Pfam ID:PF03501
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S11
Chain IDs:W (auth: SP)
Chain Length:151
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:A0A5K1K925 Pfam ID:PF00411
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S23
Chain IDs:X (auth: SQ)
Chain Length:145
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:O97248 Pfam ID:PF00164
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S12
Chain IDs:Y (auth: SR)
Chain Length:141
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:O97249 Pfam ID:PF01248
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S18
Chain IDs:Z (auth: SS)
Chain Length:156
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IIA2 Pfam ID:PF00416
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S29
Chain IDs:AA (auth: ST)
Chain Length:54
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:C0H4K8 Pfam ID:PF00253
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S15
Chain IDs:BA (auth: SU)
Chain Length:151
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IDB0 Pfam ID:PF08069, PF00312
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S11
Chain IDs:CA (auth: SV)
Chain Length:161
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:O77381 Pfam ID:PF16205, PF00366
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S17
Chain IDs:DA (auth: SW)
Chain Length:137
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8I502 Pfam ID:PF00833
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S19
Chain IDs:EA (auth: SX)
Chain Length:145
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:C0H5C2 Pfam ID:PF00203
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S19
Chain IDs:FA (auth: SY)
Chain Length:170
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IFP2 Pfam ID:PF01090
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S21
Chain IDs:GA (auth: SZ)
Chain Length:82
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
UniProt ID:Q8IHS5 Pfam ID:PF01249
Polymer Type:polyribonucleotide
Description:mRNA
Chain IDs:BC (auth: mR)
Chain Length:7
Number of Molecules:1
Biological Source:Plasmodium falciparum 3D7
Ligand Molecules
NA
Primary Citation
Inhibition elongation factor binding to the malarial 80S ribosome triggers ribosome biogenesis
To Be Published ? ? ? (?)
Primary Citation of related structures
8TPU