ISDA

Entry Detail

PDB ID:

9BS6

EMDB ID:

EMD-44859

Keywords:

HYDROLASE/DNA/RNA

Title:

CryoEM structure of ThermoCas9 in post-cleavage state with a DNA containing NNNNCGA PAM

Biological Source:

Source Organism:

Geobacillus thermodenitrificans, synthetic construct

Host Organism:

Escherichia coli

PDB Version:

Deposition Date:

2024-05-13

Release Date:

2025-05-28

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.60 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Polymer Type:polypeptide(L)
Description:CRISPR-associated endonuclease Cas9
Chain IDs:E (auth: A)
Chain Length:1082
Number of Molecules:1
Biological Source:Geobacillus thermodenitrificans

Polymer Type:polyribonucleotide
Description:RNA (114-MER)
Chain IDs:F (auth: B)
Chain Length:149
Number of Molecules:1
Biological Source:Geobacillus thermodenitrificans

Polymer Type:polydeoxyribonucleotide
Description:DNA (25-MER)
Chain IDs:A (auth: C)
Chain Length:26
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Description:DNA (5'-D(P*GP*TP*AP*TP*AP*CP*AP*CP*GP*AP*AP*GP*CP*T)-3')
Chain IDs:B (auth: D)
Chain Length:34
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Description:DNA (5'-D(*AP*GP*CP*TP*TP*CP*GP*TP*GP*TP*AP*TP*AP*C)-3')
Chain IDs:C (auth: P)
Chain Length:14
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Description:DNA (5'-D(P*CP*TP*AP*GP*A)-3')
Chain IDs:D (auth: X)
Chain Length:6
Number of Molecules:1
Biological Source:synthetic construct

Ligand Molecules

GTP

Primary Citation

CryoEM structure of ThermoCas9 in post-cleavage state with a DNA containing NNNNCGA PAM

Shu, Y, Zhao, Y.Show

To be Published ? ? ? (?)

Primary Citation of related structures