9BQW image
Deposition Date 2024-05-10
Release Date 2025-08-06
Last Version Date 2025-08-06
Entry Detail
PDB ID:
9BQW
Keywords:
Title:
Fab F945-DbpA complex
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.55 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Decorin-binding protein A
Gene (Uniprot):dbpA
Chain IDs:A
Chain Length:163
Number of Molecules:1
Biological Source:Borreliella burgdorferi
Polymer Type:polypeptide(L)
Molecule:F945 Fab Heavy Chain
Chain IDs:B (auth: H)
Chain Length:228
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:F945 Fab Light Chain
Chain IDs:C (auth: L)
Chain Length:213
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Germline encoded residues dominate the interaction of a human monoclonal antibody with decorin binding protein A of Borrelia burgdorferi.
Front Immunol 16 1611828 1611828 (2025)
PMID: 40692775 DOI: 10.3389/fimmu.2025.1611828

Abstact

During the course of Lyme disease, humans mount a robust and sustained antibody response against dozens of Borrelia burgdorferi outer surface lipoproteins. Identifying which antibodies are associated with spirochete clearance and disease resolution is of paramount importance in therapeutic development. In this study, we describe the isolation and structural characterization of a human monoclonal antibody (MAb) against decorin binding protein A (DbpA), one of the most immunogenic of B. burgdorferi's outer surface proteins. High-resolution epitope mapping by HDX-MS and X-ray crystallography revealed that F945 associates with a lateral face of DbpA in a side-on orientation without obstructing resides associated with DbpA's ability to bind components of the extracellular matrix. The structure of the DbpA-F945 Fab complex revealed an outsized role for variable light chain (VL) germline encoded residues in mediating DbpA interactions. In fact, the majority of the critical contacts between F945 and DbpA involved Vk1-33 germline encoded residues, suggesting that certain human B cell receptors (BCR) may be preconfigured to recognize DbpA and therefore have a lower threshold for B cell activation and clonal development. Passive administration of F945 IgG was not sufficient to protect against B. burgdorferi in a mouse model of needle infection, although these experiments do not rule out a role for F945 in influencing B. burgdorferi tissue tropism and/or retention within specific niches. Nonetheless, it is tempting to speculate that F945 represents a class of DbpA antibodies with value in Lyme disease diagnostics, but that may not contribute to B. burgdorferi clearance or disease resolution in humans.

Legend

Protein

Chemical

Disease

Primary Citation of related structures