9BPG image
Entry Detail
PDB ID:
9BPG
EMDB ID:
Title:
Artemia franciscana ATP synthase FO domain, state 1, pH 7.0
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2024-05-07
Release Date:
2025-03-26
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:ATP synthase subunit c
Chain IDs:A (auth: 1), B (auth: 2), C (auth: 3), D (auth: 4), E (auth: 5), F (auth: 6), G (auth: 7), H (auth: 8)
Chain Length:128
Number of Molecules:8
Biological Source:Artemia franciscana
Polymer Type:polypeptide(L)
Description:ATP synthase subunit gamma
Chain IDs:I (auth: G)
Chain Length:290
Number of Molecules:1
Biological Source:Artemia franciscana
Polymer Type:polypeptide(L)
Description:ATP synthase subunit delta
Chain IDs:J (auth: H)
Chain Length:169
Number of Molecules:1
Biological Source:Artemia franciscana
Polymer Type:polypeptide(L)
Description:ATP synthase subunit epsilon
Chain IDs:K (auth: I)
Chain Length:66
Number of Molecules:1
Biological Source:Artemia franciscana
Polymer Type:polypeptide(L)
Description:ATP synthase subunit b
Chain IDs:L (auth: K)
Chain Length:265
Number of Molecules:1
Biological Source:Artemia franciscana
Polymer Type:polypeptide(L)
Description:ATP synthase subunit d
Chain IDs:M
Chain Length:219
Number of Molecules:1
Biological Source:Artemia franciscana
Polymer Type:polypeptide(L)
Description:ATP synthase subunit a
Chain IDs:N
Chain Length:219
Number of Molecules:1
Biological Source:Artemia franciscana
Polymer Type:polypeptide(L)
Description:ATP synthase subunit 6.8PL
Chain IDs:O (auth: P)
Chain Length:44
Number of Molecules:1
Biological Source:Artemia franciscana
Polymer Type:polypeptide(L)
Description:ATP synthase protein 8
Chain IDs:P (auth: Q)
Chain Length:53
Number of Molecules:1
Biological Source:Artemia franciscana
Polymer Type:polypeptide(L)
Description:ATP synthase subunit f
Chain IDs:Q (auth: R)
Chain Length:119
Number of Molecules:1
Biological Source:Artemia franciscana
Polymer Type:polypeptide(L)
Description:ATP synthase subunit g
Chain IDs:R (auth: S)
Chain Length:103
Number of Molecules:1
Biological Source:Artemia franciscana
Polymer Type:polypeptide(L)
Description:ATP synthase subunit e
Chain IDs:S (auth: T)
Chain Length:84
Number of Molecules:1
Biological Source:Artemia franciscana
Ligand Molecules
Primary Citation
Cryo-EM structure of the brine shrimp mitochondrial ATP synthase suggests an inactivation mechanism for the ATP synthase leak channel.
Cell Death Differ. ? ? ? (2025)
PMID: 40108410 DOI: 10.1038/s41418-025-01476-w

Abstact

Mammalian mitochondria undergo Ca2+-induced and cyclosporinA (CsA)-regulated permeability transition (mPT) by activating the mitochondrial permeability transition pore (mPTP) situated in mitochondrial inner membranes. Ca2+-induced prolonged openings of mPTP under certain pathological conditions result in mitochondrial swelling and rupture of the outer membrane, leading to mitochondrial dysfunction and cell death. While the exact molecular composition and structure of mPTP remain unknown, mammalian ATP synthase was reported to form voltage and Ca2+-activated leak channels involved in mPT. Unlike in mammals, mitochondria of the crustacean Artemia franciscana have the ability to accumulate large amounts of Ca2+ without undergoing the mPT. Here, we performed structural and functional analysis of A. franciscana ATP synthase to study the molecular mechanism of mPTP inhibition in this organism. We found that the channel formed by the A. franciscana ATP synthase dwells predominantly in its inactive state and is insensitive to Ca2+, in contrast to porcine heart ATP synthase. Single-particle cryo-electron microscopy (cryo-EM) analysis revealed distinct structural features in A. franciscana ATP synthase compared with mammals. The stronger density of the e-subunit C-terminal region and its enhanced interaction with the c-ring were found in A. franciscana ATP synthase. These data suggest an inactivation mechanism of the ATP synthase leak channel and its possible contribution to the lack of mPT in this organism.

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Primary Citation of related structures