9BM7 image
Entry Detail
PDB ID:
9BM7
EMDB ID:
Keywords:
Title:
State-7b of motor domain from full-length human dynein-1 in 5 mM ATP
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-05-02
Release Date:
2025-04-23
Method Details:
Experimental Method:
Resolution:
3.58 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Cytoplasmic dynein 1 heavy chain 1
Chain IDs:A
Chain Length:4646
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
The mechanochemical cycle of reactive full-length human dynein 1.
Nat.Struct.Mol.Biol. ? ? ? (2025)
PMID: 40263469 DOI: 10.1038/s41594-025-01543-3

Abstact

Dynein-driven cargo transport has a pivotal role in diverse cellular activities, central to which is dynein's mechanochemical cycle. Here, we performed a systematic cryo-electron microscopic investigation of the conformational landscape of full-length human dynein 1 in reaction, in various nucleotide conditions, on and off microtubules. Our approach reveals over 40 high-resolution structures, categorized into eight states, providing a dynamic and comprehensive view of dynein throughout its mechanochemical cycle. The described intermediate states reveal mechanistic insights into dynein function, including a 'backdoor' phosphate release model that coordinates linker straightening, how microtubule binding enhances adenosine triphosphatase activity through a two-way communication mechanism and the crosstalk mechanism between AAA1 and the regulatory AAA3 site. Our findings also lead to a revised model for the force-generating powerstroke and reveal means by which dynein exhibits unidirectional stepping. These results improve our understanding of dynein and provide a more complete model of its mechanochemical cycle.

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