9BLY image
Deposition Date 2024-05-02
Release Date 2025-04-23
Last Version Date 2025-08-27
Entry Detail
PDB ID:
9BLY
Keywords:
Title:
Composite structure of full-length human dynein-1 in phi-particle conformation
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytoplasmic dynein 1 heavy chain 1
Gene (Uniprot):DYNC1H1
Chain IDs:A, B
Chain Length:4646
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytoplasmic dynein 1 intermediate chain 2
Gene (Uniprot):DYNC1I2
Chain IDs:C, D
Chain Length:638
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytoplasmic dynein 1 light intermediate chain 2
Gene (Uniprot):DYNC1LI2
Chain IDs:E, F
Chain Length:492
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynein light chain roadblock-type 1
Gene (Uniprot):DYNLRB1
Chain IDs:G, H
Chain Length:96
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynein light chain 1, cytoplasmic
Gene (Uniprot):DYNLL1
Chain IDs:I, J
Chain Length:89
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynein light chain Tctex-type 1
Gene (Uniprot):DYNLT1
Chain IDs:K, L
Chain Length:113
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
The mechanochemical cycle of reactive full-length human dynein 1.
Nat.Struct.Mol.Biol. 32 1383 1395 (2025)
PMID: 40263469 DOI: 10.1038/s41594-025-01543-3

Abstact

Dynein-driven cargo transport has a pivotal role in diverse cellular activities, central to which is dynein's mechanochemical cycle. Here, we performed a systematic cryo-electron microscopic investigation of the conformational landscape of full-length human dynein 1 in reaction, in various nucleotide conditions, on and off microtubules. Our approach reveals over 40 high-resolution structures, categorized into eight states, providing a dynamic and comprehensive view of dynein throughout its mechanochemical cycle. The described intermediate states reveal mechanistic insights into dynein function, including a 'backdoor' phosphate release model that coordinates linker straightening, how microtubule binding enhances adenosine triphosphatase activity through a two-way communication mechanism and the crosstalk mechanism between AAA1 and the regulatory AAA3 site. Our findings also lead to a revised model for the force-generating powerstroke and reveal means by which dynein exhibits unidirectional stepping. These results improve our understanding of dynein and provide a more complete model of its mechanochemical cycle.

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