9BLP image
Deposition Date 2024-05-01
Release Date 2025-05-07
Last Version Date 2025-11-19
Entry Detail
PDB ID:
9BLP
Title:
T450S mutant of repeat domain 2 from Clostridium perfringens adhesin CPE0147 with intramolecular ester bond
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.20 Å
R-Value Free:
0.15
R-Value Work:
0.14
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Surface anchored protein
Mutagens:T450S
Chain IDs:A
Chain Length:156
Number of Molecules:1
Biological Source:Clostridium perfringens B str. ATCC 3626
Primary Citation
Protease mimicry: Dissecting the ester bond crosslinking mechanics in bacterial adhesin proteins.
Protein Sci. 34 e70238 e70238 (2025)
PMID: 40713781 DOI: 10.1002/pro.70238

Abstact

The ester bond crosslink discovered within bacterial adhesin proteins offers a captivating insight into the convergent evolution of enzyme-like machinery. Crystal structures reveal a putative catalytic triad comprising an acid-base-nucleophile combination and an oxyanion-like site that suggests a serine protease-like mechanism drives the crosslinking process. We now provide confirmation of the mechanism, revealing functional catalytic dyads or triads, and the recapitulation of protease machinery from a Pseudomonas bacterium and a human cytomegalovirus related only by convergent evolution. Molecular dynamics simulations suggest how a conservative threonine-to-serine mutation of the nucleophile induces hydrolysis and eliminates the ester bond crosslink. Collectively, our structural, functional, and computational efforts detail the molecular intricacies of intramolecular ester bond formation and underscore the convergent evolutionary adaptations of bacteria in exploiting enzyme-like machinery to protect essential adhesin proteins from the mechanical, biological, and chemical hostilities of their replicative niche.

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Primary Citation of related structures
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