9BJ1 image
Entry Detail
PDB ID:
9BJ1
Title:
Crystal structure of inhibitor GNE-6893 bound to HPK1
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-04-24
Release Date:
2024-10-02
Method Details:
Experimental Method:
Resolution:
2.18 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Mitogen-activated protein kinase kinase kinase kinase 1
Chain IDs:A, B
Chain Length:311
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Discovery of GNE-6893, a Potent, Selective, Orally Bioavailable Small Molecule Inhibitor of HPK1.
Acs Med.Chem.Lett. 15 1606 1614 (2024)
PMID: 39291002 DOI: 10.1021/acsmedchemlett.4c00319

Abstact

Hematopoietic progenitor kinase 1 (HPK1) serves a key immunosuppressive role as a negative regulator of T-cell receptor (TCR) signaling. HPK1 loss-of-function is associated with augmentation of immune function and has demonstrated synergy with immune checkpoint inhibitors in syngeneic mouse cancer models. These data offer compelling evidence for the use of selective small molecule inhibitors of HPK1 in cancer immunotherapy. We identified a novel series of isoquinoline HPK1 inhibitors through fragment-based screening that displayed promising levels of biochemical potency and activity in functional cell-based assays. We used structure-based drug design to introduce key selectivity elements while simultaneously addressing pharmacokinetic liabilities. These efforts culminated in a molecule demonstrating subnanomolar biochemical inhibition of HPK1 and strong in vitro augmentation of TCR signaling in primary human T-cells. Further profiling of this molecule revealed excellent kinase selectivity (347/356 kinases <50% inhibition @ 0.1 μM), a favorable in vitro safety profile, and good projected human pharmacokinetics.

Legend

Protein

Chemical

Disease

Primary Citation of related structures