9BIO image
Entry Detail
PDB ID:
9BIO
EMDB ID:
Title:
Structure of VRC44.01 Fab in complex with 3BNC117-purified C1080.c3 RnS SOSIP.664 HIV-1 Env trimer
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2024-04-23
Release Date:
2024-11-13
Method Details:
Experimental Method:
Resolution:
2.83 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Envelope glycoprotein gp41
Chain IDs:A (auth: B), G (auth: A), M (auth: J)
Chain Length:170
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:Envelope glycoprotein gp160
Chain IDs:B (auth: G), H (auth: C), N (auth: K)
Chain Length:478
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:VRC44.01 heavy chain
Chain IDs:F (auth: H), L (auth: I), R (auth: P)
Chain Length:124
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:VRC44.01 light chain
Chain IDs:E (auth: L), K (auth: F), Q (auth: O)
Chain Length:107
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:3BNC117 heavy chain
Chain IDs:C (auth: S), I (auth: D), O (auth: M)
Chain Length:226
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:3BNC117 light chain
Chain IDs:D (auth: U), J (auth: E), P (auth: N)
Chain Length:206
Number of Molecules:3
Biological Source:Homo sapiens
Primary Citation

Abstact

Antibodies that target the gp120-gp41 interface of the HIV-1 envelope (Env) trimer comprise a commonly elicited category of broadly neutralizing antibodies (bNAbs). Here, we isolate and characterize VRC44, a bNAb lineage with up to 52% neutralization breadth. The cryoelectron microscopy (cryo-EM) structure of antibody VRC44.01 in complex with the Env trimer reveals binding to the same gp120-gp41 interface site of vulnerability as antibody 35O22 from a different HIV-1-infected donor. In addition to having similar angles of approach and extensive contacts with glycans N88 and N625, VRC44 and 35O22 derive from the same IGHV1-18 gene and share convergent mutations, indicating these two antibodies to be members of the only known highly glycan-dependent multidonor class. Strikingly, both lineages achieved almost 100% neutralization breadth against virus strains displaying high-mannose glycans. The high breadth and reproducible elicitation of VRC44 and 35O22 lineages validate germline-based methods of immunogen design for targeting the HIV-1 gp120-gp41 interface.

Legend

Protein

Chemical

Disease

Primary Citation of related structures