9BGM image
Deposition Date 2024-04-19
Release Date 2024-09-04
Last Version Date 2024-10-16
Entry Detail
PDB ID:
9BGM
Keywords:
Title:
Pseudomonas phage DEV neck and tail (portal, head-to-tail and tail tube proteins)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:gp75 tail tube
Gene (Uniprot):vBPaePDEV_00075
Chain IDs:A (auth: a), D (auth: A), G (auth: D), J (auth: G), M (auth: J), P (auth: M), S (auth: P), V (auth: S), Y (auth: W), BA (auth: Z), EA (auth: f), HA (auth: i)
Chain Length:321
Number of Molecules:12
Biological Source:Pseudomonas phage vB_PaeP_DEV
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:gp83 head-to-tail
Gene (Uniprot):vBPaePDEV_00083
Chain IDs:B (auth: b), E (auth: B), H (auth: E), K (auth: H), N (auth: K), Q (auth: N), T (auth: Q), W (auth: T), Z (auth: X), CA (auth: d), FA (auth: g), IA (auth: j)
Chain Length:244
Number of Molecules:12
Biological Source:Pseudomonas phage vB_PaeP_DEV
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:gp80 portal protein
Gene (Uniprot):vBPaePDEV_00080
Chain IDs:C (auth: c), F (auth: C), I (auth: F), L (auth: I), O (auth: L), R (auth: O), U (auth: R), X (auth: V), AA (auth: Y), DA (auth: e), GA (auth: h), JA (auth: k)
Chain Length:726
Number of Molecules:12
Biological Source:Pseudomonas phage vB_PaeP_DEV
Ligand Molecules
Primary Citation
Integrative structural analysis of Pseudomonas phage DEV reveals a genome ejection motor.
Nat Commun 15 8482 8482 (2024)
PMID: 39353939 DOI: 10.1038/s41467-024-52752-1

Abstact

DEV is an obligatory lytic Pseudomonas phage of the N4-like genus, recently reclassified as Schitoviridae. The DEV genome encodes 91 ORFs, including a 3398 amino acid virion-associated RNA polymerase (vRNAP). Here, we describe the complete architecture of DEV, determined using a combination of cryo-electron microscopy localized reconstruction, biochemical methods, and genetic knockouts. We built de novo structures of all capsid factors and tail components involved in host attachment. We demonstrate that DEV long tail fibers are essential for infection of Pseudomonas aeruginosa but dispensable for infecting mutants with a truncated lipopolysaccharide devoid of the O-antigen. We determine that DEV vRNAP is part of a three-gene operon conserved in 191 Schitoviridae genomes. We propose these three proteins are ejected into the host to form a genome ejection motor spanning the cell envelope. We posit that the design principles of the DEV ejection apparatus are conserved in all Schitoviridae.

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Primary Citation of related structures